Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag0437 ATGGACTCAAACTCAGAGCTGATCATGAACAATCTCACTGCACTGCAAAGCTCTTACCTTAATAATGATGAGGGTTTAGAAATACCCTTCTCAAGTGACCGCTTCTCCGATGAAAACCTAAACTTCCCTACTACTGTTGATCAAGAAAAGTTCACCTATAATAATGATTATTCTATTCCGGCTGCTCTTTCCTTAATATCTGCTGATCTTGATAACTGGACGCATGAGAGCAACGCAGGAGGAAGAGCAAGCATAGAGGATCCTTCTCTTCCTTCACTTTCTAGAGGACCTAAGAACATGGGCGGAAGAAAAAGGAAAAGAAGCGAAGGCAGAGATGGAGGGAAGACGACAACAAGAGAAGTAATTCATGTGAGAGCAAAACGAGGTCAAGCTACTGACAGCCATAGTTTGGCTGAAAGGGTAAGAAGAGAGAAAATAAACCAGCGGCTGAAATGCTTACGGGACCTTGTTCCAGGATGCTACAAGACAATGGGAATGCCAGTCATGTTGGGTGTGATCATAAACTATGTCCAATCACTCCAGAATCAAATTGAGCTTTCAGTTGCAAGTAGGTATTATGACTTCAACTGCTCCTCGGAGCCTGATCCTGCAGAAACAACAAAGGGGACAGATGCGCATGAAGTGCAAGAGATGGAGAGAATGGTGAGAGAAGAAGGGTATGGCGGCAACCTCTTTTTCCCTCCAACATGTCCACTTTGA 720 44.03 MDSNSELIMNNLTALQSSYLNNDEGLEIPFSSDRFSDENLNFPTTVDQEKFTYNNDYSIPAALSLISADLDNWTHESNAGGRASIEDPSLPSLSRGPKNMGGRKRKRSEGRDGGKTTTREVIHVRAKRGQATDSHSLAERVRREKINQRLKCLRDLVPGCYKTMGMPVMLGVIINYVQSLQNQIELSVASRYYDFNCSSEPDPAETTKGTDAHEVQEMERMVREEGYGGNLFFPPTCPL 239
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2134965 2136484 + Conep06aG0044700.1 Cone6ag0437 439321

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag0437 239 SMART finulus 136 186 IPR011598 GO:0046983(InterPro)
Cone6ag0437 239 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 102 197 IPR024097 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)
Cone6ag0437 239 MobiDBLite consensus disorder prediction 79 119 - -
Cone6ag0437 239 Gene3D - 130 191 IPR036638 GO:0046983(InterPro)
Cone6ag0437 239 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 130 180 IPR011598 GO:0046983(InterPro)
Cone6ag0437 239 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 128 188 IPR036638 GO:0046983(InterPro)
Cone6ag0437 239 Pfam Helix-loop-helix DNA-binding domain 134 160 IPR011598 GO:0046983(InterPro)
Cone6ag0437 239 MobiDBLite consensus disorder prediction 103 119 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag0437 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone6ag0437 Cone-Chr6:2134965 Cone6ag0499 Cone-Chr6:2493438 7.71E-24 dispersed
Cone12ag1155 Cone-Chr12:9213888 Cone6ag0437 Cone-Chr6:2134965 2.03E-23 wgd
Cone13ag0303 Cone-Chr13:2373843 Cone6ag0437 Cone-Chr6:2134965 1.40E-46 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g326 . . . . . Bpe10g01021 . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0437 . . . . . . . . . . . . . . . Cmo15g00954 . Cma15g00915 . Car15g00796 Cpe13g00466 Cpe04g01400 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013301 0 2 0 1 1 1 0 1 1 0 1 1 1 0 1 1 1 1 1 1 0 0 1 1 4 1 1 1 1 1 27
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46286 None None None None Cone TF