Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag0454 ATGGCGACTGCGACGGCGTCGACGTCGTTAGGTTTCGTGAGCTGGGAAGAGTTGTTCGCGTTTGACGACGAAGGGAGAAAAGAGGTCCGTTTCTACGTCAAGCGGAGGGATGGGAGCTCAAATCTTATTGTGAGGGGGAAAGACAAGATCTTCCATCACGTCAAAGGCCCTAACGTGCCTTTTCCGCCCCATGAGAAGCTGAAGTCTCGGAGTGAGGTGGTTGGTTGGCTTAATTCCATCGTTTCAGAGTCAGCAAGGGATGAAGAAGCCCAACCGTCTGGTTCTTCTTTGGAGGATAGAGATGCTTCCCAGTCGGATATTACAACTTCAAAGAAACTGGGTCGGCATACAAAACCGTTTTCATGGATAGGCCATCCTTGGAGATGTAGGGATATGCGTTGGCATTATCAGGGATTTCGTCGCAATGGTTTTAAAATATCTGTTCACAGCTTTGTCTATATATTGACAGAAGAAGGCAAATGCCCTGTTGCCTACGTGGAAGATATGTATGAGGACTTGGAAGGCCAGAAGAAGGTTATGGTACAGTGGTTTGATAATAGTGATGAGGTTGGTATAGTTTCTGAAAAGTGTAATGACAGAGAGATTTTCTTTCCTTTTGGAAGTCACGAGCTCAGCGTAGAATGCATAGATGGGATTGCTACTGTCCTTGGTCCTCGACATTTCAAAAGATTTCAGAACAAGGCAATATATAGTAACATTAAACCATTTGTATGCAAAAGGAAACTTTGTGAAAAGAGTGAACCTGAGCCCTTTAACATCACTCTACTTAGAGGATATTGGGAGCAGGAGATAATTAAGAAGCACTTTGTAGCTCAATCTTCTTTAACTACTGAAGACAATGTTGATGATAATGGGATGAGACCTAATAAGAGAAGTCGTCGTTCAAAAGGCAATGACTTGGAGTTTGCTAATACAAGAACACCCATGACTGTAGTTTGTAGGGACATGCAAAAAACTAGCAGTAAGAGTAATCCAGTAAATAGTTCATCGTATTTAGCTGTAGGTTCCCTTGTTGAAGTCTTATCACAAGATAGTGGTATTCGAGGTTGTTGGAACAGAGCTTTGATTGTGAAGAAGCATAAGCACCATGATAGGGTAAAGGTGCAATATCAACATCTCCAAGACCCTGTTGCGGAATCTAAAAAACTAGAGGAGTGGATTTCATTGAGGATTGCGGACCCTGATGATATGGCTATTCGAATAGCTGGAAGAACAACAATACGTCCGATCCCTCCTAAATCAAGTGAAGACGGAATTTTCTCGACTATTAATGTCGGGACAGCTGTTGATGTGTGGTGGTCCGATGCATGGTGGGAAGGTATTGTAATTCAGAAAGAACCCGATGAAACATTCTGTGTATATTTCCCAGGTGAAAAGAAAGAATCAACTTTTAGGCCTAGTGAGATGAGACATTCTAAAGAGTGGTTAGGAAGTAGGTGGATGCCTATAGAGAGAAAGCCAGAAGTTGTAACATTACTTTCCCTGACAAGGCCAGAAATTGGTAGAACTAGTGAACCCATATCATGTGATTCTCATCTGGGCTCTTCTAATGATAAGGTAGAAAAATTTGAGGTGATTCGAGATATATTAAAGGATGATTTGCTGACTAAACGAAAGTGGGGAGCAACAAGGAAGAGACGCGTCTGCAAAAGAAAGAGGTATGTTCTAAAGCCAAAAATCGTTGATAAAAATAGCTGTGAAGGCAACTCAGATACAGTGGGTTCTTCTCATACTCGCAAGAGACTTCTTACAACGAGTCTTAAGGTTGTTAACTATGATAACTGCAAGTACACAAGAGATTCTCGATTTGGTTCTTCCTCGGTTGTTCCAACTCTAACAAGCTTGGTTTTGTCTAGGTGA 1881 42.0 MATATASTSLGFVSWEELFAFDDEGRKEVRFYVKRRDGSSNLIVRGKDKIFHHVKGPNVPFPPHEKLKSRSEVVGWLNSIVSESARDEEAQPSGSSLEDRDASQSDITTSKKLGRHTKPFSWIGHPWRCRDMRWHYQGFRRNGFKISVHSFVYILTEEGKCPVAYVEDMYEDLEGQKKVMVQWFDNSDEVGIVSEKCNDREIFFPFGSHELSVECIDGIATVLGPRHFKRFQNKAIYSNIKPFVCKRKLCEKSEPEPFNITLLRGYWEQEIIKKHFVAQSSLTTEDNVDDNGMRPNKRSRRSKGNDLEFANTRTPMTVVCRDMQKTSSKSNPVNSSSYLAVGSLVEVLSQDSGIRGCWNRALIVKKHKHHDRVKVQYQHLQDPVAESKKLEEWISLRIADPDDMAIRIAGRTTIRPIPPKSSEDGIFSTINVGTAVDVWWSDAWWEGIVIQKEPDETFCVYFPGEKKESTFRPSEMRHSKEWLGSRWMPIERKPEVVTLLSLTRPEIGRTSEPISCDSHLGSSNDKVEKFEVIRDILKDDLLTKRKWGATRKRRVCKRKRYVLKPKIVDKNSCEGNSDTVGSSHTRKRLLTTSLKVVNYDNCKYTRDSRFGSSSVVPTLTSLVLSR 626
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2232050 2236249 + Conep06aG0046400.1 Cone6ag0454 439338

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag0454 626 Pfam BAH domain 145 247 IPR001025 GO:0003682(InterPro)
Cone6ag0454 626 MobiDBLite consensus disorder prediction 290 307 - -
Cone6ag0454 626 MobiDBLite consensus disorder prediction 85 110 - -
Cone6ag0454 626 MobiDBLite consensus disorder prediction 284 308 - -
Cone6ag0454 626 SMART agenet_At_2 428 484 IPR014002 -
Cone6ag0454 626 SMART agenet_At_2 337 404 IPR014002 -
Cone6ag0454 626 Gene3D - 111 258 IPR043151 -
Cone6ag0454 626 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 329 574 - -
Cone6ag0454 626 CDD Tudor_Agenet_AtDUF_rpt1_3 339 419 - -
Cone6ag0454 626 Pfam Agenet domain 342 419 IPR008395 -
Cone6ag0454 626 ProSiteProfiles BAH domain profile. 144 260 IPR001025 GO:0003682(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag0454 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone6ag0454 Cone-Chr6:2232050 Cone9ag0016 Cone-Chr9:91229 5.06E-70 dispersed
Cone6ag0454 Cone-Chr6:2232050 Cone9ag0466 Cone-Chr9:2217182 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g293 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0454 Cone9ag0466 . . . . . . . . . . Bma01g00164 . . . . . . . . Cpe13g00412 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004134 1 5 2 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 1 2 44