Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag0456 ATGGCCAGCGACAACGAAGCTTCTCGTCGCAGGCACCGGAAATCAGAATCCGAAGACGAGGCTGAAAAGTCGTCGAAGCGCCACAAACACAGTCACCATCATCGCCGACATCGCCACGGCCATAGCAACAAAAAGCAAGAAGAGGAAACTAACCTTGTGGCTGAGGGTATCGTTACTGCTTCTGTTCCTATTGCTTCTCCTGTGAAGAATAGTTCTCATCGGATCGAAGACGATGTGGAGGAAGGTGAAATTCTCGAAGAGGATTGCTTTGTTGTCGGGGAGGATGCGTTTGCTGGACAGAACGCAAATTCTGCTACCGAGCCCGTGGAAGCAGAAGAAGATGGAGTATCCGCTGCATCTGATAAGCGAAATCTGGGAGTTCTTGAATGGAACGCATTCTCTCACTCAGAAGTTAGTATGCAGATGGAGGAAAAATTAATTTCTAAACCTTGTCTGGAAGGTCATGTCAATGGGGGTGTGGGTCAAGAATCTCATAAAAGGGAGAGGAGGCAGTATAAAGAGGTTCTGTCCCTGTCTAAAGAAGCTCACAGTGATAAATGTGGGATGCTGGTGCATTCACTACCTAACGACAGACATCGTGATGTGCCGGACCATAACCGAAGCAAGCCAAGGTCAAACTATTATTTTAGAGAGAGATCTGATTCACATGGGATTGTTGAAGAGGTGGTCCGTTCAAAAACTAGTGGTCATCATGGCAGGGATTTGTCGATGTATGCTGAGAGAAAGAGGACTGGTAATGACTCATCTGATGAAAAGTGGCACAGTGGTAAAGATATGGTGAGGGTTGTCGAAAGAGAACACATTACTAGCTATAGCCGGTACATTGGTGGAGAGGACAGGCTTCTGGATCGAGATACTCGGGGCAGAGGGGGGAGCAGGGAGGTAGAGATGGATAGGGACCAGATAAAGGAAAATGAACGAGAAAGGAGTAGAGATCGGGAAACAGACAGGGATAGGAGGAGGGAGAAAGTACGAGAAAGGAGAAGGGACAGGAAGAGGGAGGTGGAATGGGAATGGAGCAGGGAAAGAGAGGTGGATAGGGATAGGAGGAGGGATCAAGAAAGAGGCAGGAGCAGGGACAAAGGCACAGATAGGGATAGAATAAGGGAGAAGGATAGAGATTGGAGCAGGGAGAGGGTTAGGGCCGCAGAAACCAGTAGAGAAAGGGAAAGGGTGCAGGAGAATCAAAGAGATATGGAGAGGGAATGGAGAAGGGAGCAGGATAGTGAGAGACGAAAGGATAGAAGTAGGGGTTACATCGAGAAAGATAGGGAGAAGTATGGGGAACCTGAAGAAAGCTATGGCAATCAAGGTAGATACAAAGATTATAGGCAATCCAGAGATGATGGAAAAGAACATCATGGGGACAAAAGAAGAGATTCTGAAAAGCTTTATACTTCCAGAAGTAATTTGGACGGGGGTGAAGACGTATTAAAGAGAGATGATGAGGAAGAGGGGGACTATGAAGAAAATGGTGCTCTCCAGCCTGATGATCAAGAAGAGGAAGATCTTAACAGAATCAAGGAGGAGAGTAGAAGGAGAAGGCAAGCCATCTTAGAAAAATACAAAAGCGAGCAGTCAGAGCGACAATGTAGACCTCACACAGAGGTGGCAGAGAAAGATAAAGAAGCTTCTGATGATCGTGGCGAATCTGTATCAGCTGCTGATACTGCTTCAGAAAATGTTGATGGGATAGATGATTATGCTGCAGACCCATCCTTTGATGTGGGAAAATCTCCTCAACAAAATGGAGTTGCTGTTTCTGAGAGGAAGTCTGCTGCCGGTGGCCTTGGAGATGGTACTCCGAAGAGTGAGAGGTCTGATGACATGTTCTGTGATGATATCTTTGGTGAGACGCCGACTAGAGTTCAGAAAATGGGAAAAGGAGATTGTTCAAGGATAGAAATGAGCGGTCTTCGTGACAATTGGGATGATGCAGATGGATATTATAGCTACAGGTTTGGGGAAGTGCTTGACGGTCAATATGAAGTTACTGCTGCTCATGGGAAAGGTGTCTTTTCGACAGTAGTTCGTGCAAGAAATCTTAAGGCTGGTAATGGTGAACCAGAAGAGGTGGCAATCAAAATTCTGCGTAGTAATGAAACAATGTACAAGGCTGGTTTGGGCGAGCTGGTCATATTGAAGAAATTAATAGGTGCAGATCCTGATGACAAGCGTCATTGTGTTCTCTTCCTTTCAAGTTTCAAGTATAGAAACCATCTTTGTTTAGTTTTTGAATCTCTTCAAATGAATCTCCGAGAAGTCTTAAAAAAGTTCGGGCGCAACATCGGGCTGAAACTAACTGCTGTTAGAGCATATGCTAAACAGCTCTTCATTTCCCTGAAGCATCTTAGGAACTGTGGTGTTCTCCATTGTGACATAAAGCCGGATAACATGCTAGTTAATGAAGCAAAAAATGTACTGAAGCTTTGTGATTTTGGTAATGCCATGTTTGCTGGAAAAAATGAAGTTACACCGTACCTTGTTAGCCGCTTTTATCGTGCTCCTGAAATAATTTTGGGGCTGCCATATGACCATCCAGTGGATATCTGGTCGGTTGGTTGCTGTTTATATGAGCTCTATACTGGAAAAGTTCTTTTTCCAGGTCCTTCAAACAATGACATGCTACGGCTTCACATGGAGCTGAAGGGTCCTTTTCCAAAGAAAATGCTCAGGAAGGGAGCATTTAGTGATCAGCATTTTGACCAGGATCTAAATTTCCATGCTACAGAAGAGGATCCTGTCACTAAAAAGGCTGTGAAGCGAATGATGGTGAATATCAAGTCAAAAGATGTTGGATCAGTTATTACAGGATCACCTGGTGAGGATCCGAAGATGTTGGCCAATTTCAAAGATATTCTGGACAAAATTTCTGTTTTGGATCCAGAGAAGAGAATGACAGTATCACAGGCCCTGAATCATCCATTCATAACGGGCAAGTGA 2964 44.8 MASDNEASRRRHRKSESEDEAEKSSKRHKHSHHHRRHRHGHSNKKQEEETNLVAEGIVTASVPIASPVKNSSHRIEDDVEEGEILEEDCFVVGEDAFAGQNANSATEPVEAEEDGVSAASDKRNLGVLEWNAFSHSEVSMQMEEKLISKPCLEGHVNGGVGQESHKRERRQYKEVLSLSKEAHSDKCGMLVHSLPNDRHRDVPDHNRSKPRSNYYFRERSDSHGIVEEVVRSKTSGHHGRDLSMYAERKRTGNDSSDEKWHSGKDMVRVVEREHITSYSRYIGGEDRLLDRDTRGRGGSREVEMDRDQIKENERERSRDRETDRDRRREKVRERRRDRKREVEWEWSREREVDRDRRRDQERGRSRDKGTDRDRIREKDRDWSRERVRAAETSRERERVQENQRDMEREWRREQDSERRKDRSRGYIEKDREKYGEPEESYGNQGRYKDYRQSRDDGKEHHGDKRRDSEKLYTSRSNLDGGEDVLKRDDEEEGDYEENGALQPDDQEEEDLNRIKEESRRRRQAILEKYKSEQSERQCRPHTEVAEKDKEASDDRGESVSAADTASENVDGIDDYAADPSFDVGKSPQQNGVAVSERKSAAGGLGDGTPKSERSDDMFCDDIFGETPTRVQKMGKGDCSRIEMSGLRDNWDDADGYYSYRFGEVLDGQYEVTAAHGKGVFSTVVRARNLKAGNGEPEEVAIKILRSNETMYKAGLGELVILKKLIGADPDDKRHCVLFLSSFKYRNHLCLVFESLQMNLREVLKKFGRNIGLKLTAVRAYAKQLFISLKHLRNCGVLHCDIKPDNMLVNEAKNVLKLCDFGNAMFAGKNEVTPYLVSRFYRAPEIILGLPYDHPVDIWSVGCCLYELYTGKVLFPGPSNNDMLRLHMELKGPFPKKMLRKGAFSDQHFDQDLNFHATEEDPVTKKAVKRMMVNIKSKDVGSVITGSPGEDPKMLANFKDILDKISVLDPEKRMTVSQALNHPFITGK 987
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2237611 2250173 + Conep06aG0046600.1 Cone6ag0456 439340

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag0456 987 PANTHER DUAL SPECIFICITY PROTEIN KINASE 49 986 IPR050494 GO:0004674(PANTHER)|GO:0018105(PANTHER)|GO:0018107(PANTHER)
Cone6ag0456 987 MobiDBLite consensus disorder prediction 1 54 - -
Cone6ag0456 987 ProSitePatterns Serine/Threonine protein kinases active-site signature. 796 808 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone6ag0456 987 MobiDBLite consensus disorder prediction 1 26 - -
Cone6ag0456 987 Coils Coil 515 535 - -
Cone6ag0456 987 MobiDBLite consensus disorder prediction 101 120 - -
Cone6ag0456 987 Pfam Protein kinase domain 670 984 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone6ag0456 987 FunFam Serine/threonine-protein kinase PRP4 homolog 729 985 - -
Cone6ag0456 987 CDD STKc_PRP4 669 984 IPR044092 GO:0004674(InterPro)|GO:0006468(InterPro)|GO:0045292(InterPro)
Cone6ag0456 987 MobiDBLite consensus disorder prediction 27 41 - -
Cone6ag0456 987 SUPERFAMILY Protein kinase-like (PK-like) 656 986 IPR011009 -
Cone6ag0456 987 MobiDBLite consensus disorder prediction 281 618 - -
Cone6ag0456 987 ProSiteProfiles Protein kinase domain profile. 669 984 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone6ag0456 987 MobiDBLite consensus disorder prediction 191 265 - -
Cone6ag0456 987 Gene3D Transferase(Phosphotransferase) domain 1 729 985 - -
Cone6ag0456 987 MobiDBLite consensus disorder prediction 281 473 - -
Cone6ag0456 987 MobiDBLite consensus disorder prediction 506 557 - -
Cone6ag0456 987 Gene3D Phosphorylase Kinase; domain 1 639 728 - -
Cone6ag0456 987 Coils Coil 389 409 - -
Cone6ag0456 987 MobiDBLite consensus disorder prediction 485 505 - -
Cone6ag0456 987 SMART serkin_6 669 984 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag0456 K08827 - - vvi:100247382 975.696
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone6ag0456 Cone-Chr6:2237611 Cone17ag1359 Cone-Chr17:9508131 3.50E-29 dispersed
Cone6ag0456 Cone-Chr6:2237611 Cone9ag0467 Cone-Chr9:2222296 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g291 . . Bda01g01858 . . . Bma14g01704 . . Cmo18g01042 . Cma18g01030 . Car18g00952 Sed14g1516 Cpe09g00291 . Bhi07g01339 Tan04g0874 Cmetu10g1483 Lac13g0482 Hepe01g1204 . . Cla05g02311 Cam05g2484 . . Clacu05g2479 Cmu05g2340 . . . Cone6ag0456 Cone9ag0467 Lsi04g00266 Csa05g02600 Chy10g01135 Cme10g00272 . Blo11g00836 . . Bpe11g01696 . . . . . . . Cma15g01400 . Car15g01262 Cpe13g00051 . . . . . . . . Cla01g00533 Cam01g0553 Cec01g0545 Cco01g0569 Clacu01g0551 Cmu01g0524 Cre09g1986 Lsi09g00576 . Chy09g00937 Cme09g01465
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003313 0 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 2 1 1 1 10 7 1 50
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82918 None None None None Cone PK