Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag0459 ATGTCTATGGTTGATGAACCGCTATATCCTATAGCTGTTCTTATAGACGAGCTAAAAAATGATGACATCCAACTACGGTTGAATTCAATTCGTAGGCTCTCTACGATTGCACGTGCTCTTGGAGAGGAGCGAACTCGTAAGGAGCTGATCCCATTTCTGAGTGAAAACAACGATGATGATGATGAGGTACTACTTGCAATGGCAGAGGAGTTAGGGGTGTTTATCCCATATGTTGGGGGAGTGGAGCATGCTCATGTCTTGCTCCCACCTTTGGAGACCCTCTGCACTGTGGAGGAAACCTGTGTCAGAGACAAAGCTGTCGAGTCATTGTGCAGAATTGGTTCTCAAATGAGGGAAAGTGATTTGGTTGATTGGTTTATTCCTTTGGTTAAGAGATTAGCAGCAGGAGAATGGTTTACGGCTCGAGTCTCTGCATGCGGACTATTCCATATAGCCTATCCTAGTGCCCCAGAGATATTGAAGACAGAGTTGCGGTCAATATATGGCCAACTGTGTCAAGATGACATGCCAATGGTTAGGAGGTCTGCTGCAACAAATCTTGGAAAATTTGCTGCAACAGTTGAAACTGCTCATCTAAAGAGTGACATCATGTCAATATTTGAGGATCTTACACAGGATGACCAAGATTCTGTGCGATTATTAGCCGTTGAAGGTTGTGCTGCTCTTGGAAAATTATTGGAGCCCCAAGATTGTGTTGCACATATTCTCCCAGTTATTGTTAACTTTTCTCAGGATAAATCTTGGCGTGTGCGATACATGGTTGCGAATCAGTTGTATGAGCTGTGTGAAGCTGTGGGACCTGAACCTACTAGAACGGACTTGGTTCCTGCATATGTTCGCTTGCTTCGAGACAATGAGGCTGAAGTTCGTATTGCAGCTGCTGGTAAAGTGACCAAGTTTTGCCGAATCTTAAATCCAGAACTGGCCATTCAACACATTCTTCCTTGTGTGAAGGAATTGTCATCAGATTCTTCCCAGCATGTTCGCTCTGCTTTGGCTTCAGTTATAATGGGAATGGCTCCTGTATTGGGAAAGGATTCAACAATTGAACAGCTTCTTCCAATTTTTCTCTCACTTTTGAAGGATGAATTTCCTGATGTACGCCTTAATATAATTAGCAAGCTTGATCAAGTTAATCAGGTTATCGGAATTGATCTGCTGTCTCAATCACTATTACCAGCAATTGTAGAGCTCGCAGAAGATAGACATTGGAGAGTTCGACTTGCAATAATCGAGTATATTCCCTTGTTGGCCAGTCAATTAGGTGTAGGGTTTTTTGATGATAAGCTCGGTGCTCTTTGCATGCAGTGGTTACAGGATAAGGTTTACTCAATTCGAGATGCTGCTGCTAACAATTTGAAACGCCTTGCAGAAGAGTTTGGTCCTGAATGGGCAATGCAACATATAGTTCCACAGGTTCTTGAAATGATTAGCAACCCACACTATTTATACCGAATGACCATACTTCGTGCAATCTCTCTTCTTGCTCCAGTCATGGGTTCAGAAATTACATGCTCAAAGCTGCTCCCTGTGGTTGTTCTTGCTTCGAAAGACAGAGTTCCGAATATCAAATTTAATGTCGCAAAGGTCCTTCAATCCCTAATCCCTATAGTTGACCAACCTGTTGTGGAGAATGTAATCCGACCCTGCTTGGTCGAGCTTAGTGAAGATCCAGACGTTGATGTCCGGTTTTTTGCCAACCAAGCATTGCAGTCAATCGATCATGTCATGATGTCTTAA 1761 43.1 MSMVDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPEILKTELRSIYGQLCQDDMPMVRRSAATNLGKFAATVETAHLKSDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRTDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPVLGKDSTIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHIVPQVLEMISNPHYLYRMTILRAISLLAPVMGSEITCSKLLPVVVLASKDRVPNIKFNVAKVLQSLIPIVDQPVVENVIRPCLVELSEDPDVDVRFFANQALQSIDHVMMS 586
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2260547 2266566 + Conep06aG0046900.1 Cone6ag0459 439343

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag0459 586 ProSiteProfiles HEAT repeat profile. 359 397 IPR021133 -
Cone6ag0459 586 ProSiteProfiles HEAT repeat profile. 10 48 IPR021133 -
Cone6ag0459 586 ProSiteProfiles HEAT repeat profile. 437 475 IPR021133 -
Cone6ag0459 586 Pfam PPP2R1A-like HEAT repeat 275 351 IPR054573 -
Cone6ag0459 586 ProSiteProfiles HEAT repeat profile. 398 436 IPR021133 -
Cone6ag0459 586 ProSiteProfiles HEAT repeat profile. 554 586 IPR021133 -
Cone6ag0459 586 ProSiteProfiles HEAT repeat profile. 242 280 IPR021133 -
Cone6ag0459 586 ProSiteProfiles HEAT repeat profile. 164 202 IPR021133 -
Cone6ag0459 586 ProSiteProfiles HEAT repeat profile. 320 358 IPR021133 -
Cone6ag0459 586 Gene3D - 3 583 IPR011989 -
Cone6ag0459 586 ProSiteProfiles HEAT repeat profile. 515 552 IPR021133 -
Cone6ag0459 586 Pfam HEAT repeat 440 465 IPR000357 GO:0005515(InterPro)
Cone6ag0459 586 Pfam HEAT repeat 242 270 IPR000357 GO:0005515(InterPro)
Cone6ag0459 586 ProSiteProfiles HEAT repeat profile. 281 319 IPR021133 -
Cone6ag0459 586 ProSiteProfiles HEAT repeat profile. 476 514 IPR021133 -
Cone6ag0459 586 FunFam Serine/threonine-protein phosphatase 2A regulatory subunit A alpha isoform 2 581 - -
Cone6ag0459 586 SUPERFAMILY ARM repeat 8 580 IPR016024 -
Cone6ag0459 586 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE PP2A 65 KDA REGULATORY SUBUNIT 2 581 IPR051023 GO:0000159(PANTHER)|GO:0005737(PANTHER)|GO:0006470(PANTHER)|GO:0019888(PANTHER)
Cone6ag0459 586 ProSiteProfiles HEAT repeat profile. 203 241 IPR021133 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag0459 K03456 - - csv:101222376 1121.69
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag0843 Cone-Chr13:7583643 Cone6ag0459 Cone-Chr6:2260547 7.11E-104 wgd
Cone19ag0847 Cone-Chr19:6667198 Cone6ag0459 Cone-Chr6:2260547 3.13E-105 wgd
Cone6ag0459 Cone-Chr6:2260547 Cone9ag0471 Cone-Chr9:2238704 1.30E-128 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g285 . . . . . . Bma14g01702 . . Cmo18g01046 . . . Car18g00956 Sed08g0346 Cpe09g00287 . Bhi07g01344 Tan04g0882 Cmetu09g1399 Lac13g0477 Hepe01g1207 . . Cla05g02314 Cam05g2487 Cec05g2510 Cco05g2553 Clacu05g2482 Cmu05g2343 Cre05g2461 Cone13ag0843 Cone19ag0847 Cone6ag0459 Cone9ag0471 Lsi04g00272 Csa05g02597 Chy10g01132 Cme10g00275 . Blo11g00834 Bda07g01530 . Bpe11g01693 . . . . . . . . . . . Cpe04g01409 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003579 2 5 2 2 2 1 2 1 1 0 1 1 1 1 1 2 1 4 2 1 1 2 1 1 0 1 1 2 2 2 46