Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag0464 ATGCGAGAAGCAGTGATGAGGATGGATTCAAGAGAATACGTGAAGGCTCTGGAATATGAACGCAGGAAAATTCAGGTTTTCCAGCGCGAGCTGCCTCTTTGTTTCGAGCTTGTCACTCAAGCGATCGAGTCGTGCAGGCACCAGTTATCGGAGACGACGACGGAGGACTTGAACGGGGGACAATCTGACTGCTCGGAGCAGATTTCTCACCAAGGTTCTCCTGTTTTGGAGGAATTCATTCTTGTGAAGAGGGCGGTTTCTTCGGATTCTGACGATGAAGAGCAACAATCTGATCGTAAGATTAACAAGAGTACCGATGGCAAAATATTATGTCAATCGGACTGGCTTCGATCTGCTCAGCTATGGAACCAAACGCCAGATCTACTCGCTAAGGAGGATGGGGCTAAGAAAGGATCGATTATGGAGGTGAAGAGGAATGGCGGTGCATTCCAGCCGTTTCACAGAGAGAAAACTGAGGATCAAAATAAAATAGAAGCGTCGGTGGTGTCTAAAGCTCCCTCCTCCGCTACTCCAACTGCCGAAACAGGATCAGGATCAGGAGGCAGTGGCGGAAGCAGCGTAGGAGAAGAGAAAGAAGGATCGAGCCAGAGGAAACAGAGGCGGTGCTGGTCGCCGGAGTTGCATAGACGATTCTTGCACGCTCTTCAACAGCTCGGAGGTTCACAATGTGCTACTCCTAAACAGATCAGGGAGTTGATGAAGGTGGATGGTCTTACTAACGATGAGGTCAAAAGCCATTTACAGAAATACCGATTGCACACAAGAAGGCCAAGCCATGTGATGCATGGCAATAACAGCTGTAGCAGCAGCCCAGCAGAAGCAGCACACTTAGTGGTGGTTGGGGGCATATGGGTGTCTCCGCCAGAATATGCAGCAGCAATGGTGGCCGCAACTGGGAAACCAGGCAGTGTTGCCGCCACAAATGGAGGAGGAGGCGTGTATGCACCAGTGGCTTTACCACCACCACAACAGCCACCCCGTTCCGTAGTCTGTAACGATAGGCCGCAAGCAAGGCTATCTAACTCTAATCAATCCGAGTCTGAAGAAAAAAGGGTGATTAGTATTAGTATTAACCCTAGTGAAGGTGGAGCCAGTGCTCGATCTATTTCGCCGTCTCTATCTTCCTCTTCCACACACACTGCCACGTAA 1170 50.0 MREAVMRMDSREYVKALEYERRKIQVFQRELPLCFELVTQAIESCRHQLSETTTEDLNGGQSDCSEQISHQGSPVLEEFILVKRAVSSDSDDEEQQSDRKINKSTDGKILCQSDWLRSAQLWNQTPDLLAKEDGAKKGSIMEVKRNGGAFQPFHREKTEDQNKIEASVVSKAPSSATPTAETGSGSGGSGGSSVGEEKEGSSQRKQRRCWSPELHRRFLHALQQLGGSQCATPKQIRELMKVDGLTNDEVKSHLQKYRLHTRRPSHVMHGNNSCSSSPAEAAHLVVVGGIWVSPPEYAAAMVAATGKPGSVAATNGGGGVYAPVALPPPQQPPRSVVCNDRPQARLSNSNQSESEEKRVISISINPSEGGASARSISPSLSSSSTHTAT 389
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2290524 2292234 - Conep06aG0047400.1 Cone6ag0464 439348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag0464 389 NCBIfam myb-like DNA-binding domain, SHAQKYF class 205 260 IPR006447 GO:0003677(InterPro)
Cone6ag0464 389 Pfam Myb-like DNA-binding domain 207 258 IPR001005 -
Cone6ag0464 389 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 8 355 IPR044787 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone6ag0464 389 MobiDBLite consensus disorder prediction 341 389 - -
Cone6ag0464 389 Gene3D - 204 262 - -
Cone6ag0464 389 MobiDBLite consensus disorder prediction 322 389 - -
Cone6ag0464 389 SUPERFAMILY Homeodomain-like 203 263 IPR009057 -
Cone6ag0464 389 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 202 262 IPR017930 -
Cone6ag0464 389 MobiDBLite consensus disorder prediction 165 197 - -
Cone6ag0464 389 MobiDBLite consensus disorder prediction 149 164 - -
Cone6ag0464 389 MobiDBLite consensus disorder prediction 145 209 - -
Cone6ag0464 389 FunFam Myb family transcription factor 204 262 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone3ag1117 Cone-Chr3:29755232 Cone6ag0464 Cone-Chr6:2290524 3.07E-39 dispersed
Cone6ag0464 Cone-Chr6:2290524 Cone8ag1154 Cone-Chr8:10046877 2.59E-44 dispersed
Cone12ag1112 Cone-Chr12:9000945 Cone6ag0464 Cone-Chr6:2290524 2.88E-41 wgd
Cone13ag0852 Cone-Chr13:7621202 Cone6ag0464 Cone-Chr6:2290524 9.30E-98 wgd
Cone19ag0853 Cone-Chr19:6697499 Cone6ag0464 Cone-Chr6:2290524 3.31E-101 wgd
Cone6ag0464 Cone-Chr6:2290524 Cone9ag0476 Cone-Chr9:2270650 5.49E-180 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46289 PF00447 HSF_DNA-bind 9.80E-28 CL0123 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag0464 - - - 0.0