Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag0465 ATGCAAATTCCTTCCTCCACATTCATATCATCAACAAGCACTGATCAAAGTGCTTGTTTAGAACCAGACGAGGAAGAAGAGGTAGATGAGGAAGAAGAAAGACAAGCTGAAGACTCCATTTTTCTCTCTCTCTGCCCTCCTGGCCAACAGATCAAAATTTCCAAACACCAATTCATTAACCAACAGCCTACACATGATCATGTTCCTAATCATCACCTAAACCCTAGTACAGACAATAAGCACCACCACCACCACCACCATCATCATCATCATCATACTCTTTATCAGGATGCAGGTGCAGTTACAGTTGCCCTCCACATCGGCTCTTCATCCTCTACCGTTCCCTCCACTACCACCACCGCTACTACTTCCACCAACCCTAATACTGATCCCATACCAGGCCAGTACTGGATCCCCTCTCCGGCCCAAATACTCGTCGGCCCAACCCAGTTTTCTTGCTCCGTCTGCAACAAAACCTTCACTCGTTACAATAACATGCAGATGCATATGTGGGGGCATGGATCAGAGTACAGGAAAGGGCCAGAATCATTAAGAGGGACAAAGCCGAGCTCGTCCATGCTAAGGCTGCCATGTTATTGCTGTGCAGAGGGATGTAAGAACAACATAGAGCATCCCAGATCGAAGCCGCTGAAGGATTTTAGGACGCTGCAGACGCACTACAAGAGAAAGCATGGGGCGAAGCCGTTTGGGTGTAGGAAATGCGGGAAGGCGTTTGCAGTGAGAGGGGATTGGAGGACCCACGAGAAAAATTGTGGAAAGATCTGGTTTTGTATTTGTGGTTCCGATTTTAAGCACAAGAGGTCCTTGAAAGACCATGTTAGGGCTTTTGGTAATGGCCACGCGCCTCATACCGTTGACGCTATGTGTTGTACTACTACCGAGGTTGAAGAAGAAGAAGAAGAAGAAGACGAAGACCGAGAAGATGGAGAAGAATATTATGTTGGAGCTGGTCATGATCATGGGTTTGTTTACTATTGA 999 46.95 MQIPSSTFISSTSTDQSACLEPDEEEEVDEEEERQAEDSIFLSLCPPGQQIKISKHQFINQQPTHDHVPNHHLNPSTDNKHHHHHHHHHHHHTLYQDAGAVTVALHIGSSSSTVPSTTTTATTSTNPNTDPIPGQYWIPSPAQILVGPTQFSCSVCNKTFTRYNNMQMHMWGHGSEYRKGPESLRGTKPSSSMLRLPCYCCAEGCKNNIEHPRSKPLKDFRTLQTHYKRKHGAKPFGCRKCGKAFAVRGDWRTHEKNCGKIWFCICGSDFKHKRSLKDHVRAFGNGHAPHTVDAMCCTTTEVEEEEEEEDEDREDGEEYYVGAGHDHGFVYY 332
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2295739 2296823 + Conep06aG0047500.1 Cone6ag0465 439349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag0465 332 ProSitePatterns Zinc finger C2H2 type domain signature. 153 173 IPR013087 -
Cone6ag0465 332 SUPERFAMILY beta-beta-alpha zinc fingers 147 174 IPR036236 -
Cone6ag0465 332 ProSiteProfiles Zinc finger C2H2 type domain profile. 236 256 IPR013087 -
Cone6ag0465 332 MobiDBLite consensus disorder prediction 62 95 - -
Cone6ag0465 332 Gene3D Classic Zinc Finger 150 173 - -
Cone6ag0465 332 Gene3D Classic Zinc Finger 234 283 - -
Cone6ag0465 332 MobiDBLite consensus disorder prediction 109 133 - -
Cone6ag0465 332 FunFam Zinc finger protein WIP2 205 287 - -
Cone6ag0465 332 ProSiteProfiles Zinc finger C2H2 type domain profile. 151 178 IPR013087 -
Cone6ag0465 332 PANTHER ZINC FINGER PROTEIN WIP2 26 312 IPR043584 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0010468(InterPro)|GO:0010468(PANTHER)|GO:0048856(PANTHER)
Cone6ag0465 332 MobiDBLite consensus disorder prediction 19 36 - -
Cone6ag0465 332 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 235 259 - -
Cone6ag0465 332 MobiDBLite consensus disorder prediction 1 37 - -
Cone6ag0465 332 SUPERFAMILY beta-beta-alpha zinc fingers 217 256 IPR036236 -
Cone6ag0465 332 MobiDBLite consensus disorder prediction 77 93 - -
Cone6ag0465 332 MobiDBLite consensus disorder prediction 1 18 - -
Cone6ag0465 332 SMART c2h2final6 236 256 IPR013087 -
Cone6ag0465 332 SMART c2h2final6 199 231 IPR013087 -
Cone6ag0465 332 SMART c2h2final6 151 173 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag0055 Cone-Chr10:333471 Cone6ag0465 Cone-Chr6:2295739 2.32E-107 dispersed
Cone11ag1379 Cone-Chr11:10001837 Cone6ag0465 Cone-Chr6:2295739 3.46E-104 dispersed
Cone18ag0207 Cone-Chr18:1021453 Cone6ag0465 Cone-Chr6:2295739 1.73E-103 dispersed
Cone19ag0509 Cone-Chr19:4187739 Cone6ag0465 Cone-Chr6:2295739 1.13E-103 dispersed
Cone3ag0068 Cone-Chr3:407244 Cone6ag0465 Cone-Chr6:2295739 9.73E-108 dispersed
Cone4ag1330 Cone-Chr4:10887574 Cone6ag0465 Cone-Chr6:2295739 2.39E-87 dispersed
Cone6ag0465 Cone-Chr6:2295739 Cone7ag1271 Cone-Chr7:9434418 3.68E-47 dispersed
Cone6ag0465 Cone-Chr6:2295739 Cone9ag0477 Cone-Chr9:2278423 3.38E-183 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46290 PF00982 Glyco_transf_20 3.00E-183 CL0113 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag0465 - - - 0.0