Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag0468 ATGGATGGAAGTAGCATGGACGAAAGCACAGCTAGCGACTCCACCTCCCTATCTCCGACAAGTCCACTACCCTTTCTTCCAGCCACAGACCTCTCGCCGCCGGAGAGCCTCTCCCGTCTCGGAAGCGGAGCCAGCGTCACCTTAGACTCCGAAATAACCAGCGCCACCGCAGGCGCTGGTGGTACTGTACTTGATCAGGTTGAGTCACGTAAACTGCCGTCGTCGAAATACAAAGGCGTGGTCCCACAGCCAAACGGGCGTTGGGGAGCTCAGATTTACGAGAAACACCAACGAGTCTGGCTCGGTACCTTCAATGAAGAAAACGGAGCTGCTAAAGCATACGATATTGCGGCTCAACGGTTCCGTGGACGCGACGCTATTACAAACTTCAAACCGCTCTCTGTGGCAATCCAAAATGATGACGTCGAAATGGTTTTTCTGAACTCCCATTCTAAATCGGAGATCGTCGATATGCTGCGTAAGCACACTTACAACGACGAGCTTCAGCAGAGCAAGAATAGCTACGGTCTGTTGAACAAGAACGGGAAGCGATACAGATCTAACGGAAACGACGACGTTTTCTGCAGTACGTCCGAACGGAATTCCAAAACGCGCGAGCTGCTTTTTGAAAAATCAGTTACGCCGAGTGACGTCGGGAAGCTGAACCGTCTGGTGATCCCTAAACAACATGCGGAGAAGCATTTTCCGTTGCAGGGAAAAGGCGGTGCAAACGGCGTTTCAGCGAAGGGCTTGTTGTTGAATTTTGAGGACGTGCGGGAGAAGGTATGGAGGTTTCGTTACTCGTATTGGAACAGCAGTCAAAGCTATGTGTTGACCAAAGGCTGGAGCCGGTTCGTGAAGGAGAAGAATCTTAAAGCCGGTGACGTGGTATGCTTTCTTAGATCGACCGGACCGGACAAGCAGCTTTACATCGATTGGAAGGAGAAAAACGGGTCGGGTCACGTGGTTAGACCGGTTCAGGTGGTCAGACTATTTGGGGTGAACATTTTGAAAGCTCCGGCGACTTCATGTGACGCGAAAAACCCCGGCCTGGACCTGTTGGGATTACAGTGTGGCAAAAAGCAGAGGATAATCGGAGCTTTGTAA 1107 51.31 MDGSSMDESTASDSTSLSPTSPLPFLPATDLSPPESLSRLGSGASVTLDSEITSATAGAGGTVLDQVESRKLPSSKYKGVVPQPNGRWGAQIYEKHQRVWLGTFNEENGAAKAYDIAAQRFRGRDAITNFKPLSVAIQNDDVEMVFLNSHSKSEIVDMLRKHTYNDELQQSKNSYGLLNKNGKRYRSNGNDDVFCSTSERNSKTRELLFEKSVTPSDVGKLNRLVIPKQHAEKHFPLQGKGGANGVSAKGLLLNFEDVREKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDVVCFLRSTGPDKQLYIDWKEKNGSGHVVRPVQVVRLFGVNILKAPATSCDAKNPGLDLLGLQCGKKQRIIGAL 368
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2305115 2307040 - Conep06aG0047800.1 Cone6ag0468 439352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag0468 368 ProSiteProfiles AP2/ERF domain profile. 76 131 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone6ag0468 368 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 75 336 IPR044800 GO:0003700(InterPro)
Cone6ag0468 368 SMART rav1_2 76 137 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone6ag0468 368 Gene3D AP2/ERF domain 75 132 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone6ag0468 368 ProSiteProfiles B3 DNA-binding domain profile. 209 317 IPR003340 GO:0003677(InterPro)
Cone6ag0468 368 FunFam AP2 domain-containing protein RAP2.8 75 132 - -
Cone6ag0468 368 SUPERFAMILY DNA-binding domain 75 131 IPR016177 GO:0003677(InterPro)
Cone6ag0468 368 MobiDBLite consensus disorder prediction 1 43 - -
Cone6ag0468 368 CDD B3_DNA 208 299 IPR003340 GO:0003677(InterPro)
Cone6ag0468 368 SMART B3_2 209 317 IPR003340 GO:0003677(InterPro)
Cone6ag0468 368 Pfam B3 DNA binding domain 209 315 IPR003340 GO:0003677(InterPro)
Cone6ag0468 368 Pfam AP2 domain 75 123 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone6ag0468 368 CDD AP2 75 130 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone6ag0468 368 SUPERFAMILY DNA-binding pseudobarrel domain 205 311 IPR015300 -
Cone6ag0468 368 MobiDBLite consensus disorder prediction 1 25 - -
Cone6ag0468 368 Gene3D - 196 322 IPR015300 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone6ag0468 Cone-Chr6:2305115 Cone4ag1483 Cone-Chr4:11619194 5.84E-12 dispersed
Cone12ag1093 Cone-Chr12:8927467 Cone6ag0468 Cone-Chr6:2305115 6.39E-11 wgd
Cone13ag0853 Cone-Chr13:7632578 Cone6ag0468 Cone-Chr6:2305115 8.12E-143 wgd
Cone19ag0854 Cone-Chr19:6703569 Cone6ag0468 Cone-Chr6:2305115 2.33E-139 wgd
Cone6ag0468 Cone-Chr6:2305115 Cone9ag0480 Cone-Chr9:2293951 3.34E-236 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46291 PF05183 RdRP 2.80E-181 No_clan Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag0468 K09287 - vvi:100262843 449.514