Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone6ag0468 | ATGGATGGAAGTAGCATGGACGAAAGCACAGCTAGCGACTCCACCTCCCTATCTCCGACAAGTCCACTACCCTTTCTTCCAGCCACAGACCTCTCGCCGCCGGAGAGCCTCTCCCGTCTCGGAAGCGGAGCCAGCGTCACCTTAGACTCCGAAATAACCAGCGCCACCGCAGGCGCTGGTGGTACTGTACTTGATCAGGTTGAGTCACGTAAACTGCCGTCGTCGAAATACAAAGGCGTGGTCCCACAGCCAAACGGGCGTTGGGGAGCTCAGATTTACGAGAAACACCAACGAGTCTGGCTCGGTACCTTCAATGAAGAAAACGGAGCTGCTAAAGCATACGATATTGCGGCTCAACGGTTCCGTGGACGCGACGCTATTACAAACTTCAAACCGCTCTCTGTGGCAATCCAAAATGATGACGTCGAAATGGTTTTTCTGAACTCCCATTCTAAATCGGAGATCGTCGATATGCTGCGTAAGCACACTTACAACGACGAGCTTCAGCAGAGCAAGAATAGCTACGGTCTGTTGAACAAGAACGGGAAGCGATACAGATCTAACGGAAACGACGACGTTTTCTGCAGTACGTCCGAACGGAATTCCAAAACGCGCGAGCTGCTTTTTGAAAAATCAGTTACGCCGAGTGACGTCGGGAAGCTGAACCGTCTGGTGATCCCTAAACAACATGCGGAGAAGCATTTTCCGTTGCAGGGAAAAGGCGGTGCAAACGGCGTTTCAGCGAAGGGCTTGTTGTTGAATTTTGAGGACGTGCGGGAGAAGGTATGGAGGTTTCGTTACTCGTATTGGAACAGCAGTCAAAGCTATGTGTTGACCAAAGGCTGGAGCCGGTTCGTGAAGGAGAAGAATCTTAAAGCCGGTGACGTGGTATGCTTTCTTAGATCGACCGGACCGGACAAGCAGCTTTACATCGATTGGAAGGAGAAAAACGGGTCGGGTCACGTGGTTAGACCGGTTCAGGTGGTCAGACTATTTGGGGTGAACATTTTGAAAGCTCCGGCGACTTCATGTGACGCGAAAAACCCCGGCCTGGACCTGTTGGGATTACAGTGTGGCAAAAAGCAGAGGATAATCGGAGCTTTGTAA | 1107 | 51.31 | MDGSSMDESTASDSTSLSPTSPLPFLPATDLSPPESLSRLGSGASVTLDSEITSATAGAGGTVLDQVESRKLPSSKYKGVVPQPNGRWGAQIYEKHQRVWLGTFNEENGAAKAYDIAAQRFRGRDAITNFKPLSVAIQNDDVEMVFLNSHSKSEIVDMLRKHTYNDELQQSKNSYGLLNKNGKRYRSNGNDDVFCSTSERNSKTRELLFEKSVTPSDVGKLNRLVIPKQHAEKHFPLQGKGGANGVSAKGLLLNFEDVREKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDVVCFLRSTGPDKQLYIDWKEKNGSGHVVRPVQVVRLFGVNILKAPATSCDAKNPGLDLLGLQCGKKQRIIGAL | 368 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 2305115 | 2307040 | - | Conep06aG0047800.1 | Cone6ag0468 | 439352 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone6ag0468 | 368 | ProSiteProfiles | AP2/ERF domain profile. | 76 | 131 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone6ag0468 | 368 | PANTHER | B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 | 75 | 336 | IPR044800 | GO:0003700(InterPro) | |
Cone6ag0468 | 368 | SMART | rav1_2 | 76 | 137 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone6ag0468 | 368 | Gene3D | AP2/ERF domain | 75 | 132 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone6ag0468 | 368 | ProSiteProfiles | B3 DNA-binding domain profile. | 209 | 317 | IPR003340 | GO:0003677(InterPro) | |
Cone6ag0468 | 368 | FunFam | AP2 domain-containing protein RAP2.8 | 75 | 132 | - | - | |
Cone6ag0468 | 368 | SUPERFAMILY | DNA-binding domain | 75 | 131 | IPR016177 | GO:0003677(InterPro) | |
Cone6ag0468 | 368 | MobiDBLite | consensus disorder prediction | 1 | 43 | - | - | |
Cone6ag0468 | 368 | CDD | B3_DNA | 208 | 299 | IPR003340 | GO:0003677(InterPro) | |
Cone6ag0468 | 368 | SMART | B3_2 | 209 | 317 | IPR003340 | GO:0003677(InterPro) | |
Cone6ag0468 | 368 | Pfam | B3 DNA binding domain | 209 | 315 | IPR003340 | GO:0003677(InterPro) | |
Cone6ag0468 | 368 | Pfam | AP2 domain | 75 | 123 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone6ag0468 | 368 | CDD | AP2 | 75 | 130 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone6ag0468 | 368 | SUPERFAMILY | DNA-binding pseudobarrel domain | 205 | 311 | IPR015300 | - | |
Cone6ag0468 | 368 | MobiDBLite | consensus disorder prediction | 1 | 25 | - | - | |
Cone6ag0468 | 368 | Gene3D | - | 196 | 322 | IPR015300 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone6ag0468 | Cone-Chr6:2305115 | Cone4ag1483 | Cone-Chr4:11619194 | 5.84E-12 | dispersed | |
Cone12ag1093 | Cone-Chr12:8927467 | Cone6ag0468 | Cone-Chr6:2305115 | 6.39E-11 | wgd | |
Cone13ag0853 | Cone-Chr13:7632578 | Cone6ag0468 | Cone-Chr6:2305115 | 8.12E-143 | wgd | |
Cone19ag0854 | Cone-Chr19:6703569 | Cone6ag0468 | Cone-Chr6:2305115 | 2.33E-139 | wgd | |
Cone6ag0468 | Cone-Chr6:2305115 | Cone9ag0480 | Cone-Chr9:2293951 | 3.34E-236 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
46291 | PF05183 | RdRP | 2.80E-181 | No_clan | Cone | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone6ag0468 | K09287 | - | vvi:100262843 | 449.514 |