Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag0473 ATGACTGCCGGGAAAGTGCAAGTGCGAGTGTTGATTGCCGGAGCGACTGGGTTCATCGGACGGTTCCTAGCGCAGGCCAGCTTAGCCATGCCGCACCAGTCCACTTACCTTCTGCTTCGTCCCACTTCCATTACCAAGCCTAATCCAATTGTTAAGGCTCTTCAAGAGAAGGGTGCTATAATCCTCCATGGATTGATAGATGATAAAGTCTTAATGGAGAAGATACTGAAAGAATATGAGATCGATATAGTTATATCAGCCGTGGGCGGTGAAAATATAACGGCTCAGCTTCCTTTAGCGGAGGCGATCAAAGCTGCTGGTACTGTTAAGAGATTTTTGCCATCCGAGTTTGGGCATGACGTGGATAGATCTGATCCGGTGGAACCGGGAATGACAATGTACAGAGAGAAGCGTGTTGTCAGGCGTCGGATCGAACAGCTTGGCATACCGTACACGTACATTTGTTGCAACTCTATTGCATCTTGGCCGTACTATGACAACAAGCACCCTTCCGAGGTTCTTCCGCCGTTGGATTATTTCCAAATCTATGGCGATGGAAGCATTAAAGCATACTTTGTAGCTGGGAGTGACATCGGAAAATTCACGATGAAAAGTCTAAAAGACCCTCGAACACTCGACAAATGCTTGCATTTTCGACCCGCCTGCAATCTCTACAACATGAACGAGCTTGCTTCTCTTTGGGAAACCAAAATTGGTCGGACCCTTCCACGTGTTACCGTCACTGAAACGGATCTACTCGCTGCCGCAGCAGAAAATTGTATACCCCAAAGTGTGGTGGCGTCATTCACGCACGATATATTCATAAAAGGGTGCCAGATCAATTTCTCAATCAACGGTCCTGATGATGTAGAAGTGAGTGGTCTTTATCCTGATGAAGCTTTTAAGCCCTTGGATGAATGCTTTGATGAGTTTGCTGTCCGAATGAATAGTAATGCCAGTTCATCTCATGACGTGGCCAATAGCAACGCTGATAATATCGCCGTCGCCTGTTGCTGA 1017 46.8 MTAGKVQVRVLIAGATGFIGRFLAQASLAMPHQSTYLLLRPTSITKPNPIVKALQEKGAIILHGLIDDKVLMEKILKEYEIDIVISAVGGENITAQLPLAEAIKAAGTVKRFLPSEFGHDVDRSDPVEPGMTMYREKRVVRRRIEQLGIPYTYICCNSIASWPYYDNKHPSEVLPPLDYFQIYGDGSIKAYFVAGSDIGKFTMKSLKDPRTLDKCLHFRPACNLYNMNELASLWETKIGRTLPRVTVTETDLLAAAAENCIPQSVVASFTHDIFIKGCQINFSINGPDDVEVSGLYPDEAFKPLDECFDEFAVRMNSNASSSHDVANSNADNIAVACC 338
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2332787 2334908 + Conep06aG0048300.1 Cone6ag0473 439357

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag0473 338 CDD PCBER_SDR_a 9 307 IPR045312 GO:0016491(InterPro)
Cone6ag0473 338 Pfam NmrA-like family 10 241 IPR008030 -
Cone6ag0473 338 Gene3D - 9 298 - -
Cone6ag0473 338 Gene3D - 158 308 - -
Cone6ag0473 338 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 9 287 IPR036291 -
Cone6ag0473 338 PANTHER PINORESINOL REDUCTASE-RELATED 8 311 IPR050608 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag0473 K13081 - - cit:102621411 454.521
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone6ag0473 Cone-Chr6:2332787 Cone8ag1205 Cone-Chr8:10247344 7.96E-69 dispersed
Cone6ag0473 Cone-Chr6:2332787 Cone9ag0486 Cone-Chr9:2320148 5.17E-223 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g257 Blo01g00484 Blo16g01051 Bda01g02098 . Bpe13g01329 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0473 Cone9ag0486 . . . . . . . . . Bpe02g02287 . Bma06g00771 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0015267 1 0 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 1 0 0 0 0 0 0 0 2 12