Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag0474 ATGAACACGATGCACTTTTACTTTGCATTATGCAGGACAATATTTTCCATTCTATGGCTTTTCCATGTGGTCATTGCGCGAGGGAGATTTTCCCTTCCGGCTCCGTCTATGCCTTGTAATCGACATATGTATGGTTTGGTACTACTTCTTTTGGTGACAAAGGAATCATTTAGAAATAAAATGTTGACATTTATTTCTAATGAACAGTGGGCACCGTGGCATGCTGTCATGGCAATACCATTGCTTGTTGCTTTCGAACTTCTTCTTTGCATTCATCTAGAGAGCACTGATGTTGTTAACTTGAAGATTGTTTTTCTTCCTCTGCTCATTTTTGAGATCGCAATTTTGATTGATAATATCAGGATGTGTAGATCTTTGATGCCCGGAGAAGATGAAACCATGAGTGATGACGTAATATGGCAAACCCTTCCTCATTTCTGGGTTGCAATTTCTATGGTTTTCTTCATAGCAGCCACCATGTTCACTCTCCTTAAGCTATGTGGTAATGTAACTGCTCTAGGCTGGTGGGACCTATTCATAAACTTCGGGATTGCAGAGTGCTTTGCGTTCCTTGTATGCACAAAGTGGTATAACCCATCAATTCATCACCATTCTTTCATGGGAGAATCAAGCTCATCATCAATGAGTATTACATATCTCGACTCTAATGAAGATCATTCTTCTAGTCAAATGTGCACCTTGCAAGACATAGGCGGACATTTCATGAAAATCCCGCTCATCATTTTCCAAATCTTGCTTTTCATGCGATTAGAGGGAACCCCAGAGAGTGCTAGACTTATTCCATGGATGGTACTTTTTAGTCCGCTTTTCTTATTGCAAGGAATTGGGGTGTTATATGCTGCCTATAGATTAGTAGAGAGGATTGTTATACTATTATTATCGGCACGAGCTGATTCCGCAAGATACTTTCGAATCACTTCTAAGCCTCGTGAACTTTTAGGATTCTTACACCATGGATCAAGGTTGCTAGGTTGGTGGTCTATTGATGAGGGAAGTAGAGAAGAACAAGCTAAACTTTACTGTGCTAAAGGATCCGGATACAACACTTTCTCGCCAGATATAGTAAAGAAAATGCCTAAAGCTAGTCTTGTTGAGGAGGTTTGGAAACTACAGGCGGCACTAAGTGAGCAATCGGAAATAACCAAGTTTAGACAGCGAGAGTACGAGCGACTACAGAATGAAAAGATTCTATGTAGAATCTGCTTCGAAGAACAGATCAACATCGTTCTCCTTCCGTGCCGGCATCACATTCTTTGCAGCACTTGCTGTGAGAAGTGTAAGAGGTGCCCCATTTGCCGAGCGCCCGTTGAGGACCGCCTGCTTGTATATCACATCTAG 1359 41.57 MNTMHFYFALCRTIFSILWLFHVVIARGRFSLPAPSMPCNRHMYGLVLLLLVTKESFRNKMLTFISNEQWAPWHAVMAIPLLVAFELLLCIHLESTDVVNLKIVFLPLLIFEIAILIDNIRMCRSLMPGEDETMSDDVIWQTLPHFWVAISMVFFIAATMFTLLKLCGNVTALGWWDLFINFGIAECFAFLVCTKWYNPSIHHHSFMGESSSSSMSITYLDSNEDHSSSQMCTLQDIGGHFMKIPLIIFQILLFMRLEGTPESARLIPWMVLFSPLFLLQGIGVLYAAYRLVERIVILLLSARADSARYFRITSKPRELLGFLHHGSRLLGWWSIDEGSREEQAKLYCAKGSGYNTFSPDIVKKMPKASLVEEVWKLQAALSEQSEITKFRQREYERLQNEKILCRICFEEQINIVLLPCRHHILCSTCCEKCKRCPICRAPVEDRLLVYHI 452
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2335120 2338092 - Conep06aG0048400.1 Cone6ag0474 439358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag0474 452 ProSiteProfiles Zinc finger RING-type profile. 405 440 IPR001841 -
Cone6ag0474 452 PANTHER TRANSMEMBRANE FRAGILE-X-F-ASSOCIATED PROTEIN 12 451 - -
Cone6ag0474 452 SUPERFAMILY RING/U-box 395 444 - -
Cone6ag0474 452 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 380 451 IPR013083 -
Cone6ag0474 452 Pfam Transmembrane Fragile-X-F protein 47 279 IPR019396 -
Cone6ag0474 452 FunFam Kinesin-like protein KIN-7D, mitochondrial 382 450 - -
Cone6ag0474 452 Pfam Zinc finger, C3HC4 type (RING finger) 403 445 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone19ag0262 Cone-Chr19:1760402 Cone6ag0474 Cone-Chr6:2335120 1.24E-198 dispersed
Cone6ag0474 Cone-Chr6:2335120 Cone9ag0487 Cone-Chr9:2322803 1.43E-262 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag0474 - - - 0.0