Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag0475 ATGAAGGAAGAAGGGGAAGATCAATTAGGAGAGTATTCTAAATCGATTACTGATCATCATCAAAACATAGAACAAGGGATTGAAGAAGAAGAAGAACAACAACAAGAGCTATTTATTCAGCAAGAGATCATCAATATGCAGCAACACCAAGAAAACACTAGTACTAATAGTCATGATCATAGTATGTATGGAGGCGGTGGAAGAGGGTTCATTAATTTCCCTCATGAAGGTGGATTTTCACCAATTTTACAGCCATGGAGTAATACCAGCAGCACTAGTCATCATTTCAACCCGGCCCATTATGCAGTAAACCCGGTTCGAGACCAAGTTCATCATCACGATCCATTTCTCATCCCTCCACCTCCTCCAGTTTCGTCCTCATCCTATGCTTCTTTCTTCAACCGATCAAGAGCTCCTTCTCTTCATTTTGCATACGATCAGCATCATCCATCACCAGATCAACTCAGAATCTTGTCAAGCTCACTTGGACCGATGGTTCAAACCGGTTCAGCTCCTTTTGGTCTCCAAACCGAGCTTGGAAAGTTGACGGCTCAAGAAATCATGGATGCTAAGGCTCTCGCCGCTTCTAAATCACATAGTGAAGCAGAGAGGAGAAGAAGAGAAAGAATCAACAACCATCTTGCTAAGTTGCGCAGCCTGCTGCCCAGCACCACTAAAACGGACAAGGCTTCATTACTTGCCGAGGTGATACAACACGTGAAGGAGCTGAAACGACAAACTTCGTTAATAGCTGAAACAAGTCCGGTACCAACCGAGATAGATGAGTTAACGGTGGATGCATCAGACGATGAGGAATCGGGCAAGTTTGTGATCAAAGCCTCTCTTTGTTGTGATGATCGGTCCGATCTTTTGCCGGATCTCATCAAAACCCTAAAGGGGTTACATCTGAAAACACTCAAGGCTGAGATCACAACACTCGGAGGACGTGTAAAAAATGTCTTGTTCATAACCGGCGATAATCAAGATGAATCGACAAGTTCTAGCCCAAATAATTGTGACCAACAATATTGTATTAGTTCGATACAAGAGGCACTTAAGGCAGTTATGGAGAAGACGAACGGGGACCACGATTTATCTTCTGCAAGCATTAAGAGACAAAGGACTAATAACAATATGAATATCCTATAA 1149 42.91 MKEEGEDQLGEYSKSITDHHQNIEQGIEEEEEQQQELFIQQEIINMQQHQENTSTNSHDHSMYGGGGRGFINFPHEGGFSPILQPWSNTSSTSHHFNPAHYAVNPVRDQVHHHDPFLIPPPPPVSSSSYASFFNRSRAPSLHFAYDQHHPSPDQLRILSSSLGPMVQTGSAPFGLQTELGKLTAQEIMDAKALAASKSHSEAERRRRERINNHLAKLRSLLPSTTKTDKASLLAEVIQHVKELKRQTSLIAETSPVPTEIDELTVDASDDEESGKFVIKASLCCDDRSDLLPDLIKTLKGLHLKTLKAEITTLGGRVKNVLFITGDNQDESTSSSPNNCDQQYCISSIQEALKAVMEKTNGDHDLSSASIKRQRTNNNMNIL 382
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2343077 2345866 - Conep06aG0048500.1 Cone6ag0475 439359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag0475 382 PANTHER TRANSCRIPTION FACTOR BHLH30 165 376 IPR045847 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone6ag0475 382 FunFam transcription factor bHLH30 189 252 - -
Cone6ag0475 382 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 194 243 IPR011598 GO:0046983(InterPro)
Cone6ag0475 382 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 198 250 IPR036638 GO:0046983(InterPro)
Cone6ag0475 382 CDD bHLH_AtAIG1_like 189 267 - -
Cone6ag0475 382 SMART finulus 200 249 IPR011598 GO:0046983(InterPro)
Cone6ag0475 382 Pfam Helix-loop-helix DNA-binding domain 197 244 IPR011598 GO:0046983(InterPro)
Cone6ag0475 382 Gene3D - 189 250 IPR036638 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag1174 Cone-Chr17:8616020 Cone6ag0475 Cone-Chr6:2343077 8.53E-24 dispersed
Cone20ag0556 Cone-Chr20:3115122 Cone6ag0475 Cone-Chr6:2343077 3.39E-30 dispersed
Cone6ag0475 Cone-Chr6:2343077 Cone9ag0972 Cone-Chr9:4909296 1.02E-33 dispersed
Cone13ag0629 Cone-Chr13:6384985 Cone6ag0475 Cone-Chr6:2343077 8.10E-48 transposed
Cone19ag0634 Cone-Chr19:5476327 Cone6ag0475 Cone-Chr6:2343077 3.79E-49 transposed
Cone1ag1660 Cone-Chr1:57789563 Cone6ag0475 Cone-Chr6:2343077 1.79E-32 transposed
Cone6ag0475 Cone-Chr6:2343077 Cone9ag0488 Cone-Chr9:2328217 1.04E-207 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46293 PF07058 MAP70 6.00E-206 No_clan Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag0475 - - - 0.0