Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone6ag0475 | ATGAAGGAAGAAGGGGAAGATCAATTAGGAGAGTATTCTAAATCGATTACTGATCATCATCAAAACATAGAACAAGGGATTGAAGAAGAAGAAGAACAACAACAAGAGCTATTTATTCAGCAAGAGATCATCAATATGCAGCAACACCAAGAAAACACTAGTACTAATAGTCATGATCATAGTATGTATGGAGGCGGTGGAAGAGGGTTCATTAATTTCCCTCATGAAGGTGGATTTTCACCAATTTTACAGCCATGGAGTAATACCAGCAGCACTAGTCATCATTTCAACCCGGCCCATTATGCAGTAAACCCGGTTCGAGACCAAGTTCATCATCACGATCCATTTCTCATCCCTCCACCTCCTCCAGTTTCGTCCTCATCCTATGCTTCTTTCTTCAACCGATCAAGAGCTCCTTCTCTTCATTTTGCATACGATCAGCATCATCCATCACCAGATCAACTCAGAATCTTGTCAAGCTCACTTGGACCGATGGTTCAAACCGGTTCAGCTCCTTTTGGTCTCCAAACCGAGCTTGGAAAGTTGACGGCTCAAGAAATCATGGATGCTAAGGCTCTCGCCGCTTCTAAATCACATAGTGAAGCAGAGAGGAGAAGAAGAGAAAGAATCAACAACCATCTTGCTAAGTTGCGCAGCCTGCTGCCCAGCACCACTAAAACGGACAAGGCTTCATTACTTGCCGAGGTGATACAACACGTGAAGGAGCTGAAACGACAAACTTCGTTAATAGCTGAAACAAGTCCGGTACCAACCGAGATAGATGAGTTAACGGTGGATGCATCAGACGATGAGGAATCGGGCAAGTTTGTGATCAAAGCCTCTCTTTGTTGTGATGATCGGTCCGATCTTTTGCCGGATCTCATCAAAACCCTAAAGGGGTTACATCTGAAAACACTCAAGGCTGAGATCACAACACTCGGAGGACGTGTAAAAAATGTCTTGTTCATAACCGGCGATAATCAAGATGAATCGACAAGTTCTAGCCCAAATAATTGTGACCAACAATATTGTATTAGTTCGATACAAGAGGCACTTAAGGCAGTTATGGAGAAGACGAACGGGGACCACGATTTATCTTCTGCAAGCATTAAGAGACAAAGGACTAATAACAATATGAATATCCTATAA | 1149 | 42.91 | MKEEGEDQLGEYSKSITDHHQNIEQGIEEEEEQQQELFIQQEIINMQQHQENTSTNSHDHSMYGGGGRGFINFPHEGGFSPILQPWSNTSSTSHHFNPAHYAVNPVRDQVHHHDPFLIPPPPPVSSSSYASFFNRSRAPSLHFAYDQHHPSPDQLRILSSSLGPMVQTGSAPFGLQTELGKLTAQEIMDAKALAASKSHSEAERRRRERINNHLAKLRSLLPSTTKTDKASLLAEVIQHVKELKRQTSLIAETSPVPTEIDELTVDASDDEESGKFVIKASLCCDDRSDLLPDLIKTLKGLHLKTLKAEITTLGGRVKNVLFITGDNQDESTSSSPNNCDQQYCISSIQEALKAVMEKTNGDHDLSSASIKRQRTNNNMNIL | 382 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 2343077 | 2345866 | - | Conep06aG0048500.1 | Cone6ag0475 | 439359 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone6ag0475 | 382 | PANTHER | TRANSCRIPTION FACTOR BHLH30 | 165 | 376 | IPR045847 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone6ag0475 | 382 | FunFam | transcription factor bHLH30 | 189 | 252 | - | - | |
Cone6ag0475 | 382 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 194 | 243 | IPR011598 | GO:0046983(InterPro) | |
Cone6ag0475 | 382 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 198 | 250 | IPR036638 | GO:0046983(InterPro) | |
Cone6ag0475 | 382 | CDD | bHLH_AtAIG1_like | 189 | 267 | - | - | |
Cone6ag0475 | 382 | SMART | finulus | 200 | 249 | IPR011598 | GO:0046983(InterPro) | |
Cone6ag0475 | 382 | Pfam | Helix-loop-helix DNA-binding domain | 197 | 244 | IPR011598 | GO:0046983(InterPro) | |
Cone6ag0475 | 382 | Gene3D | - | 189 | 250 | IPR036638 | GO:0046983(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone17ag1174 | Cone-Chr17:8616020 | Cone6ag0475 | Cone-Chr6:2343077 | 8.53E-24 | dispersed | |
Cone20ag0556 | Cone-Chr20:3115122 | Cone6ag0475 | Cone-Chr6:2343077 | 3.39E-30 | dispersed | |
Cone6ag0475 | Cone-Chr6:2343077 | Cone9ag0972 | Cone-Chr9:4909296 | 1.02E-33 | dispersed | |
Cone13ag0629 | Cone-Chr13:6384985 | Cone6ag0475 | Cone-Chr6:2343077 | 8.10E-48 | transposed | |
Cone19ag0634 | Cone-Chr19:5476327 | Cone6ag0475 | Cone-Chr6:2343077 | 3.79E-49 | transposed | |
Cone1ag1660 | Cone-Chr1:57789563 | Cone6ag0475 | Cone-Chr6:2343077 | 1.79E-32 | transposed | |
Cone6ag0475 | Cone-Chr6:2343077 | Cone9ag0488 | Cone-Chr9:2328217 | 1.04E-207 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
46293 | PF07058 | MAP70 | 6.00E-206 | No_clan | Cone | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone6ag0475 | - | - | - | 0.0 |