Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag0480 ATGCCGCCTGATCAGCAAGAAGAGATTATTAATACAATGACTATTCCTCACACACCCTTTCTGGTCACTTCTGCATGTAATTACAACGTTAGTCCTAGTTCGGAAGAAGATCCTTTGCCCCGCCAGCTTCTGCAGAAACCAATCTCAGATAAATTTTCCATTCTCGGCAGATCCTTATACCCGATAACACTGAAGTTTGAAGATGTGGTATACAGTATTAACTTACAAACAACCAAAACTAGGGGAACTTGTTTGGCTTCGAATGAACCTAATCCAACCCGAACCATACTCAATGGTGTCACCGGAATGGTCCAACCAGGTGAGCTTCTGGCAATGTTAGGTCCATCGGGCAGTGGCAAGACCACCCTTTTAACCGCCATGGCGGGCCGTCTATCTGGAAAGATATTGGGCCCTATAACATACAACGGAAAGCCCTTCTCTACCTCCATCAAGCGCAAAATCGGATTTGTTTCCCAAGATGACGTGTTATACCCTCACCTTACTGTCCTCGAAACACTAACATACACTGCCATGTTAAGATTACCAAGGCAGCTTAGTAGGGAAGACAAAACTGAACAGGTTGACATGACTATAAAGGAGCTAGGGTTAACAAGATGCCGTAACAGTGTAATTGGTGGGCTGGCATTGTTTCGGGGTGTGTCAGGAGGGGAACGTAAACGGGTCAGTATCGGCCTTGAGATGATAGTAAACCCGAGCGTGTTGTTGCTTGATGAGCCCACTTCAGGCCTTGATTCGACAACAGCCCAACGGATCGTTGTGACATTGAGAGGGTTTGCTCGTGGTGGGAGAACAGTGGTTATGACAATTCATCAGCCTTCTAGTAGGTTGTATAGGATGTTTGATAAGGTGGTGGTTTTATCAGATGGGTGCCTGATTTATAGCGGGGATGCAGGTGGGGTTATGGATTATTTTGGGTCGATTGGGTATAAGCCCGATTTTGAATTCATGAACCCAGCTGATTTTCTGCTTGATCTTGCAAATGGTATTAAACCTGAAACAAGAAAGGATAATCATGATCAGTTACACTTGAATAGAAGATTGGACAATCAAGAAGATCAAAATTCAACCAAGCAATCATTGATATCATCCTACAAAAAGAACTTTTATCCTGGATTGAAGGCTGAGATCCATAGAATCTCTCATGATAACTCAAATCATTATTCCAAACCACCACCATCATCAAGAACAAGTGTTGAGAATGATCGATGGAGCAGTAGCTGGTGGGAGCAATTTAAGGTGTTGTTCAGAAGGGGATTGAAAGAGAGGAGACATGAATCTTATTCAGGTTTAAGGATTTTCCAAGTCCTGTCAGTTTCCATTCTTTCTGGCCTTTTATGGTGGCAATCTGACAATTCACATATTCAAGATCAGGTCGGACTTCTTTTCTTCTTCTCAATCTTTTGGGGCTTCTATCCACTTTTCAATGCCATATTTGCATTTCCTCAAGACCGTCCAATGCTAATCAAAGAACGATCCTCCGGCATGTACCATCTCTCCTCATACTACTTCGCTCGAATGGCAGGGGACCTACCGATGGAGCTAGTACTACCAACTTTATTCACCACAATCTCATATTGGATGGGAGGCCTCAAGCCTTCACCTATTACATTTTCACTAACCCTTTTGATCATACTTTTCAATGTGCTAGTCTGTCAAGGTCTAGGCCTAGCAATAGGAGCTATTGTAATGGATGTCAAAAAGGCCACAACCATAGCTTCCGTTACTATGTTGACGTTTTTACTAGCAGGTGGATACTACATCCAACGTATGCCAGGTTTCATAGCTTGGTTGAAGTACATTTCGCTAAGTCACTATTGCTATAAGCTTCTAGTGGGGGTACAATACTCGGTTGATGAGGTTTATGAGTGTGAATTAGGGTTAGGGTTTCATTGCAAAGTGATGGATTTTCCTGCCATTAAGTATCTGGGTCTAGGTAATATGTGGTGGGATGTCATGGCTTTAATTATAATGTTGGTTGGATATAGAGTCTTGGCCTATATAGCTTTAAGGATGATGATACGAAATTAG 2049 42.65 MPPDQQEEIINTMTIPHTPFLVTSACNYNVSPSSEEDPLPRQLLQKPISDKFSILGRSLYPITLKFEDVVYSINLQTTKTRGTCLASNEPNPTRTILNGVTGMVQPGELLAMLGPSGSGKTTLLTAMAGRLSGKILGPITYNGKPFSTSIKRKIGFVSQDDVLYPHLTVLETLTYTAMLRLPRQLSREDKTEQVDMTIKELGLTRCRNSVIGGLALFRGVSGGERKRVSIGLEMIVNPSVLLLDEPTSGLDSTTAQRIVVTLRGFARGGRTVVMTIHQPSSRLYRMFDKVVVLSDGCLIYSGDAGGVMDYFGSIGYKPDFEFMNPADFLLDLANGIKPETRKDNHDQLHLNRRLDNQEDQNSTKQSLISSYKKNFYPGLKAEIHRISHDNSNHYSKPPPSSRTSVENDRWSSSWWEQFKVLFRRGLKERRHESYSGLRIFQVLSVSILSGLLWWQSDNSHIQDQVGLLFFFSIFWGFYPLFNAIFAFPQDRPMLIKERSSGMYHLSSYYFARMAGDLPMELVLPTLFTTISYWMGGLKPSPITFSLTLLIILFNVLVCQGLGLAIGAIVMDVKKATTIASVTMLTFLLAGGYYIQRMPGFIAWLKYISLSHYCYKLLVGVQYSVDEVYECELGLGFHCKVMDFPAIKYLGLGNMWWDVMALIIMLVGYRVLAYIALRMMIRN 682
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2378456 2381029 + Conep06aG0049000.1 Cone6ag0480 439364

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag0480 682 Pfam ABC transporter 97 248 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
Cone6ag0480 682 ProSitePatterns ABC transporters family signature. 220 234 IPR017871 GO:0005524(InterPro)|GO:0016887(InterPro)
Cone6ag0480 682 FunFam ABC transporter G family member 22 84 314 - -
Cone6ag0480 682 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 50 673 IPR050352 GO:0005886(PANTHER)|GO:0016020(PANTHER)|GO:0042626(PANTHER)|GO:0055085(PANTHER)
Cone6ag0480 682 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 93 314 IPR027417 -
Cone6ag0480 682 SMART AAA_5 106 297 IPR003593 GO:0016887(InterPro)
Cone6ag0480 682 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 64 320 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
Cone6ag0480 682 MobiDBLite consensus disorder prediction 340 365 - -
Cone6ag0480 682 MobiDBLite consensus disorder prediction 340 359 - -
Cone6ag0480 682 Pfam ABC-2 type transporter 416 622 IPR013525 GO:0016020(InterPro)|GO:0140359(InterPro)
Cone6ag0480 682 Gene3D - 85 313 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag0480 K05681 - - rcu:8269490 948.732
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag1312 Cone-Chr11:9691642 Cone6ag0480 Cone-Chr6:2378456 4.67E-55 dispersed
Cone15ag1069 Cone-Chr15:8832508 Cone6ag0480 Cone-Chr6:2378456 6.45E-61 dispersed
Cone18ag0266 Cone-Chr18:1277809 Cone6ag0480 Cone-Chr6:2378456 7.52E-56 dispersed
Cone19ag0780 Cone-Chr19:6351561 Cone6ag0480 Cone-Chr6:2378456 1.38E-80 dispersed
Cone3ag0271 Cone-Chr3:1406253 Cone6ag0480 Cone-Chr6:2378456 3.52E-53 dispersed
Cone4ag1210 Cone-Chr4:10154299 Cone6ag0480 Cone-Chr6:2378456 1.61E-190 dispersed
Cone5ag1450 Cone-Chr5:9405842 Cone6ag0480 Cone-Chr6:2378456 9.68E-63 dispersed
Cone6ag0307 Cone-Chr6:1417423 Cone6ag0480 Cone-Chr6:2378456 7.55E-262 dispersed
Cone6ag0480 Cone-Chr6:2378456 Cone9ag0341 Cone-Chr9:1498424 5.70E-261 dispersed
Cone7ag1727 Cone-Chr7:11437154 Cone6ag0480 Cone-Chr6:2378456 3.11E-48 dispersed
Cone13ag0868 Cone-Chr13:7728841 Cone6ag0480 Cone-Chr6:2378456 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g240 . Blo16g01044 . . Bpe13g01320 . . . Cmo04g01619 . . . Car04g01598 . . . Cpe01g01375 . . . . . . . . . . . . . . Cone13ag0868 . Cone6ag0480 . . . . . . . . . . . . Bma06g00780 . . . . Cma15g01421 . . Cpe13g00026 . Bhi12g01423 . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001139 3 3 3 3 3 2 2 2 2 2 2 2 4 2 2 4 2 5 4 2 2 2 2 3 3 1 3 3 3 3 79