Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag0481 ATGCCGTCATCCTCCATCCTCCCCGTAACCTATCCTCCTCCATCTTCTTCGTATCCATCATTTGAATTGTTTGCTGCTTCTTCATTCATGCCGCCATCAACAACCTCCGCTGCTTTAGATCACACGATTTTTATCAAACAAGAGAACGGTCCAGCAGTCACGCTTCGTATTTCTTCAACTTTTGAGGATGAGAAGATAGTTCCTAGTAGTCCGCTTCTCTCTCGGACTTTGAGCTTCACTTCCTCTCCCGCTGCTACTGTTAACAACTCCTACCAGCACAGGCGGGACCGGACCGCTAGTGAGAACTCCTTGTCCTCTCTCTCCAGTAGCGATGGCCGTCATTCTTTGAACCATGAAGACGACCACATGGATAATGATAGAAATCTTTTCACTCGCGTTGGTTTGGAGCTTCTGAGATGCATCAGGGTAGGCTTCAGATGGATTGCAAGATTTCTAGCCCTCTATTGTTATTCAATATTACTTTTCCCCGGTTTTGTTCCAGAGGCATTGTTTATGGTGACCAATAAAGGAATAGGTGAAAACTTATTCTTTCTGTTGGATCTATACCTACCAAAGAACGTTGATGAACCAAATCCAGTGGTCGCATTTGTAACTGGTGGAGCCTGGATTATAGGAATTTATCTAATGGGCCAGTCAGCTGGAGCTCACATTGCTGCTTGTACGCTTGTTGGGCAAGTAATTAAGGAAGCTGGTGGAGAGAGCATTTCTTGGGGTGCGTCCCAAATAACCACTTATTTTGGTTTATCAGGAGGGTATAATCTGTATACTCTAGTAGATTACTTTCATAGTCGAGGTCTGTACCGTTCCTTCTTTCTAAGAATAATGGAAGGGGAGGAGTCATTACAGCGATTCTTTCCTGTAGTACTTGTCCAGGATCCAAATTTTAAAAATGCAGCTTCCCTGCTTCCTCCTATCATTCTTTTCCATGGAACCACTGATTATTCCATACCATCAGAGGCCAGTACAAGCTTTGCAGAAACTCTTCAAAGAGTAGGAGTAACAGCTGAGGCAGTTTTATATGAAGGAAAAACGCATACAGACGTATTTCTTCAGGATCCAATGAGAGGTGGTAGGGATCAAATGTTTGAAGATATAATTTCAATCATTCATGCCAATGATGCAGACGCTCTAGCCAAAGATGCAGTCGCTCCCCCACGAAAACGGCTTGTACTGGAATTTATGCTCGAGTTAGCTCGTAAAGTCAGCCCTTTCTAA 1236 43.77 MPSSSILPVTYPPPSSSYPSFELFAASSFMPPSTTSAALDHTIFIKQENGPAVTLRISSTFEDEKIVPSSPLLSRTLSFTSSPAATVNNSYQHRRDRTASENSLSSLSSSDGRHSLNHEDDHMDNDRNLFTRVGLELLRCIRVGFRWIARFLALYCYSILLFPGFVPEALFMVTNKGIGENLFFLLDLYLPKNVDEPNPVVAFVTGGAWIIGIYLMGQSAGAHIAACTLVGQVIKEAGGESISWGASQITTYFGLSGGYNLYTLVDYFHSRGLYRSFFLRIMEGEESLQRFFPVVLVQDPNFKNAASLLPPIILFHGTTDYSIPSEASTSFAETLQRVGVTAEAVLYEGKTHTDVFLQDPMRGGRDQMFEDIISIIHANDADALAKDAVAPPRKRLVLEFMLELARKVSPF 411
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2385093 2388492 - Conep06aG0049100.1 Cone6ag0481 439365

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag0481 411 Gene3D alpha/beta hydrolase 213 362 IPR029058 -
Cone6ag0481 411 MobiDBLite consensus disorder prediction 87 121 - -
Cone6ag0481 411 SUPERFAMILY alpha/beta-Hydrolases 184 354 IPR029058 -
Cone6ag0481 411 PANTHER AB HYDROLASE SUPERFAMILY PROTEIN C4A8.06C 213 377 IPR050300 GO:0016298(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag0481 K15889 - - rcu:8264512 320.857
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag0326 Cone-Chr11:1592711 Cone6ag0481 Cone-Chr6:2385093 2.74E-88 wgd
Cone18ag1173 Cone-Chr18:8402498 Cone6ag0481 Cone-Chr6:2385093 7.69E-88 wgd
Cone18ag1173 Cone-Chr18:8402498 Cone6ag0481 Cone-Chr6:2385093 7.69E-88 wgd
Cone19ag0869 Cone-Chr19:6807475 Cone6ag0481 Cone-Chr6:2385093 2.06E-122 wgd
Cone6ag0481 Cone-Chr6:2385093 Cone9ag0493 Cone-Chr9:2361622 1.74E-225 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g224 . . Bda01g02106 . . . . . Cmo04g01620 . . . Car04g01599 . Sed06g1851 . Cpe01g01376 Bhi07g01385 Tan04g0917 Cmetu10g1102 Lac13g0443 Hepe10g1857 . . Cla05g02344 Cam05g2517 Cec05g2543 Cco05g2584 Clacu05g2511 Cmu05g2373 Cre05g2490 . Cone19ag0869 Cone6ag0481 Cone9ag0493 Lsi04g00304 Csa05g02564 Chy10g01104 Cme10g00306 . . . . . Bpe02g02295 Bma01g00145 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000826 3 2 2 3 3 3 4 3 3 3 3 3 3 3 2 4 3 5 4 3 3 3 2 3 3 3 3 3 3 2 90