Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag0482 ATGGTGAAATTCTCCAAGCAATTCGAAGGGCAACTCATACCCGAATGGAGGGAAGCTTTTGTTGATTACTGGCAGCTTAAGAAAGACCTCAAAAAAATCCATCTTCTTAACAACAATAACGATAATAATATTCCAAACGGAAATGCGAATTCCTCCATCCCGAACACTTTCTTATCATTTCTTGGGAAGTTTTCTCTGTTTGGTCATAAACACAAAGATCATGGAGCAATTCAAGTGCATAAGAAACTTGCATCTTCAGCTAGTAAAGGAGATATGTACGAAACAGAATTGCTCGACCAATTTCCGGATTCAGGTGCGGCCGAGGAATTCTTTTCGTGTTTGGACCTTCAACTTAACAAGGTGAATCAATTTTACAAGACAAAGGAGAGTGAGTTCTTGGAGAGAGGAGATTCTTTGAAGAAACAAATGGAGATTCTGATCGAGTTCAAAACAGCACTTAAGCAACAGCATGGGAAAGGAGAAGATAGTGTCCAGGACAACAAAGAGGAAGATGGCTCTATTTCCTGCACAATCTCTTGTGATGAAGAGTCGGGGAAAATAGAGGAAGAACAGCTTCAAGAAAATGGCATGGGCGAATTGATTTCGACCGAAATGCCCTTTACGGACTGGGCAAGGTCAGAGGAGATTGGAAACAGCTCAATGAGAATGAAAAGAGAGGAAGGGAAGTTGATCAGACCATTTAAAGGTCAAGTTTTTAACTGCCAAGGTAAAAACGTAAGGATAAATATTCCTCTAACCAACCCGTCCCGTACCTTTTCGGCTATCGGTTATTTACTCCGGGAAGATTCGGTCAACCGATCGACAAAGAATTTTAATGCGACAGAAGGCCGGAAGCTGCATATCAACAAGACCAGATTACACCATGCAGAGAAGATGATTAGAGGAGCTTTTATTGAGCTTTATAAGGGCTTAGGCTATCTCAAAACTTATAGGAACTTGAACATGCTTGCTTTTATAAAGATCTTGAAGAAGTTTGACAAGGTCACTGGAAAACAAATCCTAGCCATTTATCTAAAAGTAGTGGAGAGTTCTTATTTCAACAGTTCGGACAAGGTGATCAAATTAGCAGATGAAGTTGAGGAGCTATTCATCAAACATTTCGCAGAAGATGATCGTCGAAAGGCCATGAAATACCTTAAACCGCAACAACGAAAAGATTCACATGCCATTACCTTCTTCATAGGGCTGTTTACCGGAGGTTTTGTTGCACTCTTTGCTGGTTATGTCATAATGGCTCATATCACCGGAATGTATAAAAGGCGATCTACTTCGCTCTATATGGAAACCGTATATCCTGTGCTAAGCCTGTTCAGCCTACTGTTCCTCCATTTCTTTCTCTATGGATGCAATATATTCGCATGGAGAAAGACCCGGATAAATTACAGCTTCATATTTGAGTTATCGCCCACCAAGGAGTTAAGATATAGAGATGTATTCTTGATCTGTACTACATCAATGACAGCAGTTATAGGTGTCATGTTTGTTCATTTATCACTGCTTTCAAAAGGGTATTCCTATGCTCAAGTCCGAGCTATTCCGGGCCTTCTGTTACTGGTCTTCTTACTATTACTTGTATGCCCCTTCAATATTTTCTACCGATCAAGCCGTTACAGATTCCTACGTGCGATAAGGAATACCGTCCTATCACCTCTCTACAAGGTTGTGATGTTGGACTTCTTCATGGCTGATCAACTCTGTAGTCAGGTACCATTGCTGAGGAATCTAGAGTACATGGCCTGTTATTACATAACAGGAAGCTTCCAAACTCAGAACTATGGTTACTGCATGAGAACCAAGCATTACCGGGATCTAGCTTATGCCGTTTCATTCCTACCATATTACTGGCGAGCTATGCAGTGTGGAAGGCGTTGGTTCGATGAAGGCCAAACAAGTCATCTTGTGAACCTAGGAAAGTATGTCTCGGCCATGTTAGCAGCTGGGGCTAAGGTAGCTTATGAGAGAGACAGAAGTGTAGGGTGGTTATGTCTTGTTGTGATCATGTCTAGTGCTGCAACTGTTTATCAATTATATTGGGACTTTGTCAAAGATTGGGGCTTGCTTCAAATGAGTTCAAAGAATCCATGGCTAAGGAACGATCTCATGCTACGTCGAAAATCTGTTTACTACTTCTCAATGGGGTTGAACTTGGTTCTGAGGCTAGCCTGGTTGCAGACGGTTCTCCATTCGAGTTTTGAGAACTATGATTCGAGAGTTATGGGGCTATTTTTAGCAGCCCTTGAAGTCATTAGAAGAGGTCTATGGAACTTTTTCAGGTTGGAGAATGAGCATCTAAATAATGCCGGAAAGTTTAGAGCCGTCAAGACGGTACCACTACCCTTTCAAGAAATTGATGGGGAAGACTAA 2385 41.47 MVKFSKQFEGQLIPEWREAFVDYWQLKKDLKKIHLLNNNNDNNIPNGNANSSIPNTFLSFLGKFSLFGHKHKDHGAIQVHKKLASSASKGDMYETELLDQFPDSGAAEEFFSCLDLQLNKVNQFYKTKESEFLERGDSLKKQMEILIEFKTALKQQHGKGEDSVQDNKEEDGSISCTISCDEESGKIEEEQLQENGMGELISTEMPFTDWARSEEIGNSSMRMKREEGKLIRPFKGQVFNCQGKNVRINIPLTNPSRTFSAIGYLLREDSVNRSTKNFNATEGRKLHINKTRLHHAEKMIRGAFIELYKGLGYLKTYRNLNMLAFIKILKKFDKVTGKQILAIYLKVVESSYFNSSDKVIKLADEVEELFIKHFAEDDRRKAMKYLKPQQRKDSHAITFFIGLFTGGFVALFAGYVIMAHITGMYKRRSTSLYMETVYPVLSLFSLLFLHFFLYGCNIFAWRKTRINYSFIFELSPTKELRYRDVFLICTTSMTAVIGVMFVHLSLLSKGYSYAQVRAIPGLLLLVFLLLLVCPFNIFYRSSRYRFLRAIRNTVLSPLYKVVMLDFFMADQLCSQVPLLRNLEYMACYYITGSFQTQNYGYCMRTKHYRDLAYAVSFLPYYWRAMQCGRRWFDEGQTSHLVNLGKYVSAMLAAGAKVAYERDRSVGWLCLVVIMSSAATVYQLYWDFVKDWGLLQMSSKNPWLRNDLMLRRKSVYYFSMGLNLVLRLAWLQTVLHSSFENYDSRVMGLFLAALEVIRRGLWNFFRLENEHLNNAGKFRAVKTVPLPFQEIDGED 794
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2405094 2409381 + Conep06aG0049200.1 Cone6ag0482 439366

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag0482 794 ProSiteProfiles SPX domain profile. 2 346 IPR004331 -
Cone6ag0482 794 PANTHER SPX DOMAIN-CONTAINING PROTEIN 1 791 IPR052486 -
Cone6ag0482 794 CDD SPX_PHO1_like 3 339 IPR034092 -
Cone6ag0482 794 Pfam SPX domain 2 348 IPR004331 -
Cone6ag0482 794 ProSiteProfiles EXS domain profile. 603 794 IPR004342 GO:0016020(InterPro)
Cone6ag0482 794 Pfam EXS family 438 771 IPR004342 GO:0016020(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag0482 K24195 - - vvi:100245828 1224.15
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone14ag0163 Cone-Chr14:781217 Cone6ag0482 Cone-Chr6:2405094 5.44E-214 dispersed
Cone15ag0173 Cone-Chr15:833642 Cone6ag0482 Cone-Chr6:2405094 1.47E-213 dispersed
Cone4ag0344 Cone-Chr4:1576787 Cone6ag0482 Cone-Chr6:2405094 3.46E-259 dispersed
Cone13ag0869 Cone-Chr13:7748105 Cone6ag0482 Cone-Chr6:2405094 0 wgd
Cone19ag0870 Cone-Chr19:6817557 Cone6ag0482 Cone-Chr6:2405094 0 wgd
Cone6ag0482 Cone-Chr6:2405094 Cone9ag0494 Cone-Chr9:2372521 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g223 Blo01g00437 . . . . . Bma14g01687 . Cmo04g01621 Cmo18g01077 . Cma18g01055 Car04g01600 Car18g00979 Sed02g1420 Cpe09g00260 Cpe01g01377 Bhi07g01386 Tan04g0919 Cmetu10g1688 Lac13g0442 Hepe10g1855 . . Cla05g02345 . . Cco05g2586 Clacu05g2513 . Cre05g2491 Cone13ag0869 Cone19ag0870 Cone6ag0482 Cone9ag0494 Lsi04g00305 Csa05g02563 Chy10g01103 Cme10g00307 . Blo11g00822 Bda07g01518 . Bpe11g01680 . . . . . . . . . Car15g00855 . . . . . . . . . . . . . . . . . . Chy09g00646 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004322 1 1 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 4 3 1 43