Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag0493 ATGGAAAGAAGAAGAGGAAGAAGAAGTAGAGAAGAAGTTGTTTCTTTGTCCTGTCTTGCTCTGTTTTGCTTCTGGGCTTCCACTGCAAATGCTCTGCTTTCTGCTAAAGGGGTCAACTATGAAGTCCAAGCTTTAATGGGGATTAAAGCTGCTCTTGAAGATCCTCATTCTGTTCTCAATTGGGATGAAAGTGCTGTTGATCCATGTAGCTGGAACATGATCACTTGCTCTTCTGATAAATTTGTCATTAGCTTGGGGTCTCCAAGCCAGAACTTGTCCGGAACCTTGTCGCCAAGTATCGGAAACTTGACCAATCTTCAATCCGTGCTTTTACAAGACAACAATATATCAGGACTAATCCCATCTGAAGTAAGCAGGCTCCAAAAGCTTCAAACGCTCGATCTTTCAAATAATATTTTCTCCGGTCAAATTCCGGGCAGTCTCTCCAGTCTCGAAAGCCTCAAATACTTGAGGCTAAACAATAACAGTCTTTCTGGAGCAATTCCTTCCTCTCTGGCTAACATGACACAGCTTTCCTTGCTGGACCTGTCTTATAACAATTTGAGCGGTCCGGTACCGAGATTTATGGCTAAAACCTTCAACCTTGCAGGAAACTATCTGATATGTGATTCTGAAACCGATCAAGACTGCAACGGGACGATTCTATTTCCGTATTATTTCCCCGTCAATACTTCTCAAAGTTCGTCACTTCCCGGAAAACCTAAAGGCAAGAAGATTGCCTTAGCCTTTGGCTCTAGCCTTGGCTGCATCTGTCTTATAACTCTCGGGTTCGGTTTCTTTCTTTGGTGGAGGCAAAGATACAACCAGCAAATATTCTTTGATGTTCATGAGCAAAACCATGAAGTAGTATACCTCGGAAATCTAAAGAAGTTTCACTTCAGAGAACTTCAGATCGCCACAAACAACTTCAGCAGCAAGAACTTGGTCGGAAAGGGCGGTTTCGGAAATGTCTACAAAGGGGTTCTCCGTGACGGCACATTTGTAGCTGTTAAAAGACTAAAAGACGGAAATGCCATTGGAGGCGAGATTCAATTCCAAACTGAAGTTGAGATGATCAGCCTAGCTGTTCATCGGAATCTCCTCCGCCTCTATGGATTCTGTATGTCTTCCTCCGAACGGCTCCTAGTCTACCCCTACATGTCAAATGGAAGTGTTGCTTCTCGCCTCAAAGTGAAACCAGTTCTAGACTGGGGTAAGAGGAAAAGCATTGCCCTGGGGGCGGCAAGGGGACTACTATATTTACACGAGCAATGTGATCCGAAGATAATTCACAGAGATGTAAAGGCTGCAAATATATTGCTCGATGACTCCTGTGAGGCGGTGGTTGGAGATTTCGGGTTGGCAAAGCTTTTAGATCACACGGAATCACATGTCACAACTGCAGTTAGAGGAACAGTTGGACATATCGCCCCGGAATATCTCTCCACGGGCCAGTCCTCAGAAAAGACAGACGTATTCGGTTTCGGGATTCTCCTTCTTGAATTGATTTCCGGTTTAAGAGCACTTGAATTCGGAAAAGTGTCGAACCAGAAGGGCGGGGCAATGCTCGATTGGGTAAAGAAAATTCACCAAGAAAAGAAGCTTGAGTTGCTGGTTGATAAGGACATGAAGGGTAACTACGATAGGATCGAACTGGAGGAAATGGTTCAAGTTGCTCTTTTATGTACACAGAACCTTCCGAGCCATAGACCGAGGATGTCAGAAGTGGTTCGGATGCTTGAAGGAGATGGACTTGCAGAGAAATGGGAAGCTTCTCAGAAAGCAGACGGAAACAGGCCAAGAGCCAATGACTTTTCTTCTTCGGAACGTTACTCCGATCTCACTGATGACTCTTCATTGCTTGCTCAAGCAATGGAGCTTTCAGGACCAAGATGA 1896 44.73 MERRRGRRSREEVVSLSCLALFCFWASTANALLSAKGVNYEVQALMGIKAALEDPHSVLNWDESAVDPCSWNMITCSSDKFVISLGSPSQNLSGTLSPSIGNLTNLQSVLLQDNNISGLIPSEVSRLQKLQTLDLSNNIFSGQIPGSLSSLESLKYLRLNNNSLSGAIPSSLANMTQLSLLDLSYNNLSGPVPRFMAKTFNLAGNYLICDSETDQDCNGTILFPYYFPVNTSQSSSLPGKPKGKKIALAFGSSLGCICLITLGFGFFLWWRQRYNQQIFFDVHEQNHEVVYLGNLKKFHFRELQIATNNFSSKNLVGKGGFGNVYKGVLRDGTFVAVKRLKDGNAIGGEIQFQTEVEMISLAVHRNLLRLYGFCMSSSERLLVYPYMSNGSVASRLKVKPVLDWGKRKSIALGAARGLLYLHEQCDPKIIHRDVKAANILLDDSCEAVVGDFGLAKLLDHTESHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELISGLRALEFGKVSNQKGGAMLDWVKKIHQEKKLELLVDKDMKGNYDRIELEEMVQVALLCTQNLPSHRPRMSEVVRMLEGDGLAEKWEASQKADGNRPRANDFSSSERYSDLTDDSSLLAQAMELSGPR 631
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2454752 2458094 + Conep06aG0050300.1 Cone6ag0493 439377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag0493 631 FunFam Somatic embryogenesis receptor kinase 1 279 386 - -
Cone6ag0493 631 MobiDBLite consensus disorder prediction 590 631 - -
Cone6ag0493 631 Pfam Leucine rich repeat N-terminal domain 39 77 IPR013210 -
Cone6ag0493 631 SUPERFAMILY L domain-like 41 312 - -
Cone6ag0493 631 FunFam Putative LRR receptor-like serine/threonine-protein kinase 38 219 - -
Cone6ag0493 631 ProSiteProfiles Protein kinase domain profile. 310 590 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone6ag0493 631 FunFam Somatic embryogenesis receptor-like kinase 1 387 600 - -
Cone6ag0493 631 Pfam Leucine rich repeat 104 164 IPR001611 GO:0005515(InterPro)
Cone6ag0493 631 Gene3D Transferase(Phosphotransferase) domain 1 387 599 - -
Cone6ag0493 631 Gene3D Ribonuclease Inhibitor 38 219 IPR032675 -
Cone6ag0493 631 SUPERFAMILY Protein kinase-like (PK-like) 286 581 IPR011009 -
Cone6ag0493 631 Gene3D Phosphorylase Kinase; domain 1 279 386 - -
Cone6ag0493 631 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 16 631 - -
Cone6ag0493 631 ProSitePatterns Protein kinases ATP-binding region signature. 316 338 IPR017441 GO:0005524(InterPro)
Cone6ag0493 631 Pfam Protein tyrosine and serine/threonine kinase 313 580 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone6ag0493 631 SMART serkin_6 310 580 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone6ag0493 631 Pfam Leucine Rich Repeat 178 195 IPR001611 GO:0005515(InterPro)
Cone6ag0493 631 ProSitePatterns Serine/Threonine protein kinases active-site signature. 429 441 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone6ag0493 631 MobiDBLite consensus disorder prediction 599 622 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag1054 Cone-Chr13:8658071 Cone6ag0493 Cone-Chr6:2454752 2.03E-195 dispersed
Cone19ag1043 Cone-Chr19:7708908 Cone6ag0493 Cone-Chr6:2454752 1.36E-209 dispersed
Cone4ag0566 Cone-Chr4:2560803 Cone6ag0493 Cone-Chr6:2454752 1.69E-202 dispersed
Cone6ag0493 Cone-Chr6:2454752 Cone9ag0505 Cone-Chr9:2417772 4.69E-284 dispersed
Cone6ag0487 Cone-Chr6:2421458 Cone6ag0493 Cone-Chr6:2454752 7.29E-74 proximal
Cone9ag0504 Cone-Chr9:2416472 Cone6ag0493 Cone-Chr6:2454752 2.08E-61 transposed
Cone13ag0880 Cone-Chr13:7810409 Cone6ag0493 Cone-Chr6:2454752 2.42E-278 wgd
Cone19ag0878 Cone-Chr19:6886699 Cone6ag0493 Cone-Chr6:2454752 1.50E-280 wgd
Cone2ag0590 Cone-Chr2:3452759 Cone6ag0493 Cone-Chr6:2454752 7.49E-44 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82920 PF09409 PUB 3.30E-15 No_clan Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag0493 - - - 0.0