Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag0499 ATGAAAGGTGGGGTTTTCTTGCCAAATATGCATCAAATGCCTCCACCTAGTTTATCTCAATTTCCTGCCAATTCTGCATTCATAGAGCGGGCCACAAGGTTTCCATGCTTCAGTGACATCGCTACTACCCCTTTCAACCTTCCGGAACCTGTGGCTCTTTGTCCTAGAGGTGTTGGTCCGGTCCACGGGCCTCATGAGGCTTATCCCAACAATGGGTTGAGGCTAAGTATCGAGCAAAACATTGGCGAAGCTTCAAAAGATGTTTCTATGGAAGTTGAGGCTAGTGAAAAGAGTCCAATTAAGAATGATAGGAGAAGTGAGAGCCCTGTGAGGTCTCAAGATGAATTGAAGCAAGGCATTGTTGGTGGGTCCAGTAATGGTTCCGATGGGGCCGAGTTTAGTGGCGGCGGCGGCGGCGGTGGTGCAGGTCAAGATGAGTCGCATATGTTGGAAGATACTATAGTGGGAGGACCTTCTTATAAGGGGCTTGGCTCTAAGAAGAGCGAAAGGGGTGGCCAGAATTCTGAAGTTGATCAAGCAAGAGACTCTCCTTGTCAGAAAGGGGAATCTGTAAAGGATGAGATGGAGATTCAAAAGAAGGAAGCCCGAACTCCAAGTTCAACTACTAATAGAGCTACAGGAAAACATTTTAAACAAGGATCTCCTGCTTCAGATCCGCCCAAGCAAGAATACATTCATGTCAGAGCTAGAAGAGGCCAGGCAACAAACAGCCATAGTCTTGCAGAGAGAGTAAGAAGAGAAAAGATTAGTGACAGGATGAAGTTCCTTCAAGACCTTGTACCGGGTTGCAGCAAGGTAACTGGCAAGGCAGTAATGCTAGATGAAATTATCAACTATGTACAATCTCTGCAACGGCAAGTTGAGTTTTTGTCAATGAAACTTGCAACAGTCAATCCATGGCTCGATTTCAACATTGAAGATCTACTGACCAAAGATATTCTTCAATCACGGGCTGCTCCATCATCTACAATGGCATTTACTCCAGAAATGCATATGCCTTATCCTTCACTACATCAATCTCCTCATGGACTTATCCCATCTGGTCTTCCTTGCATGGGCTCGGCTTCTGACATTTTACGAAGAACCATTAATTCCCAATTGATGACACCCACAACTGGTCCTGGCTTTAAGGAACCAACTCAGCTGCCCAATGTGTGGGAGGATGAGCTCCATAATGCTTTTCAGTCCTTTGGAACCCCTGCTCAGTCCAATAGTCAAGATGTAGATGGCTCTCTTCCACAAGCTGATACAAAAGTTGAAGTTTGA 1287 45.53 MKGGVFLPNMHQMPPPSLSQFPANSAFIERATRFPCFSDIATTPFNLPEPVALCPRGVGPVHGPHEAYPNNGLRLSIEQNIGEASKDVSMEVEASEKSPIKNDRRSESPVRSQDELKQGIVGGSSNGSDGAEFSGGGGGGGAGQDESHMLEDTIVGGPSYKGLGSKKSERGGQNSEVDQARDSPCQKGESVKDEMEIQKKEARTPSSTTNRATGKHFKQGSPASDPPKQEYIHVRARRGQATNSHSLAERVRREKISDRMKFLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPWLDFNIEDLLTKDILQSRAAPSSTMAFTPEMHMPYPSLHQSPHGLIPSGLPCMGSASDILRRTINSQLMTPTTGPGFKEPTQLPNVWEDELHNAFQSFGTPAQSNSQDVDGSLPQADTKVEV 428
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2493438 2497156 + Conep06aG0051000.1 Cone6ag0499 439383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag0499 428 Gene3D - 237 307 IPR036638 GO:0046983(InterPro)
Cone6ag0499 428 MobiDBLite consensus disorder prediction 202 217 - -
Cone6ag0499 428 SMART finulus 246 296 IPR011598 GO:0046983(InterPro)
Cone6ag0499 428 FunFam Basic helix-loop-helix transcription factor 237 309 - -
Cone6ag0499 428 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 238 309 IPR036638 GO:0046983(InterPro)
Cone6ag0499 428 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 18 341 IPR024097 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)
Cone6ag0499 428 MobiDBLite consensus disorder prediction 171 201 - -
Cone6ag0499 428 Pfam Helix-loop-helix DNA-binding domain 243 291 IPR011598 GO:0046983(InterPro)
Cone6ag0499 428 MobiDBLite consensus disorder prediction 89 112 - -
Cone6ag0499 428 CDD bHLH_AtBPE_like 230 315 - -
Cone6ag0499 428 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 240 290 IPR011598 GO:0046983(InterPro)
Cone6ag0499 428 MobiDBLite consensus disorder prediction 404 428 - -
Cone6ag0499 428 MobiDBLite consensus disorder prediction 84 228 - -
Cone6ag0499 428 MobiDBLite consensus disorder prediction 404 419 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone20ag0245 Cone-Chr20:1087174 Cone6ag0499 Cone-Chr6:2493438 9.47E-44 dispersed
Cone3ag1165 Cone-Chr3:30320347 Cone6ag0499 Cone-Chr6:2493438 5.34E-43 dispersed
Cone4ag1634 Cone-Chr4:12358324 Cone6ag0499 Cone-Chr6:2493438 2.30E-42 dispersed
Cone6ag0437 Cone-Chr6:2134965 Cone6ag0499 Cone-Chr6:2493438 7.71E-24 dispersed
Cone6ag0499 Cone-Chr6:2493438 Cone8ag1204 Cone-Chr8:10239336 3.10E-51 dispersed
Cone13ag0883 Cone-Chr13:7839782 Cone6ag0499 Cone-Chr6:2493438 4.67E-96 wgd
Cone19ag0883 Cone-Chr19:6924175 Cone6ag0499 Cone-Chr6:2493438 3.06E-95 wgd
Cone2ag0572 Cone-Chr2:3296185 Cone6ag0499 Cone-Chr6:2493438 7.44E-16 wgd
Cone6ag0499 Cone-Chr6:2493438 Cone9ag0512 Cone-Chr9:2454901 2.13E-252 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46294 PF11573 Med23 2.40E-25 No_clan Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag0499 - - - 0.0