Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag0508 ATGAGGACGGGGAAGAGCAATAGGGAAGATGAAGAGTATGAGGAGGATGAGTTCGATTCTAAGAAAGAAGGACCATCTTCAGCTTCTGCTGCTAATAATAGCAACAATAGCAACACTAAAGGAGATGCTAAGAACAATGATAAGGCTAATGCACTACGTTCCAAGCATTCTGTCACAGAGCAGCGTAGAAGAAGCAAGATTAATGAGAGATTCCAGATATTGAGAGATCTAATACCGCATAGTGACCAAAAGAGAGATACAGCTTCATTCCTATTGGAGGTAATTGAGTATGTACAATATTTACAGGAAAGGGTACAAAAGTACGAGGGTTCATATCAGAGCTGGAGTGGGGAGCCAACCAAGTTAATGCCATGGAGAAACAGTCATTGGCGCATCCAAAATTTTGTCGGTTATCCAGAGACTACAAAGAATGGTTCTGTTCCGGGATCAACCTTCCCAGGGAAATTTGATGAGAACAATAATACTATCTCGCCAGCTTTGCTCAAGGGTTCACAAGACCTGGTGGAGTCGGATCCTTGCAGGGTTACAACACAGCAAGCTGAAATACAGAATAAAGGAGTACCACCGCTATCTCTGCCTCTGCAGGCAAACATACCTGTTCCTGACGGTATTCCTGCCCAACCTCAACATAGACCGATTAATGATGCCCAGTCAAGCGAGGGCCATCTAACTGCTGATACTCTGAACCAGCAAGATGAGATGACAATTGAAGGGGGGACAATTAGCATCTCAAGTGCTTACTCAGAAGGGTTATTGACTACTTTGACTCAAGCACTGCAGAATGCTGGGGTGGATCTGTCACAGGCTAATATATCTGTTCAGATTGATCTTGCAAAGAGAGCAAATGGATTGTCCACCTCTGGATTGGATCCTGAGAATACTCATTCCAGCAGCCAAGCGAGGGCCCATCCAAGGGATATAGGCAGCGGGCAGGATTCAGATCATGCTACAAAGCGGCTGAAGACGTGA 990 45.05 MRTGKSNREDEEYEEDEFDSKKEGPSSASAANNSNNSNTKGDAKNNDKANALRSKHSVTEQRRRSKINERFQILRDLIPHSDQKRDTASFLLEVIEYVQYLQERVQKYEGSYQSWSGEPTKLMPWRNSHWRIQNFVGYPETTKNGSVPGSTFPGKFDENNNTISPALLKGSQDLVESDPCRVTTQQAEIQNKGVPPLSLPLQANIPVPDGIPAQPQHRPINDAQSSEGHLTADTLNQQDEMTIEGGTISISSAYSEGLLTTLTQALQNAGVDLSQANISVQIDLAKRANGLSTSGLDPENTHSSSQARAHPRDIGSGQDSDHATKRLKT 329
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2524471 2527834 + Conep06aG0052000.1 Cone6ag0508 439392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag0508 329 MobiDBLite consensus disorder prediction 46 64 - -
Cone6ag0508 329 MobiDBLite consensus disorder prediction 291 311 - -
Cone6ag0508 329 Gene3D - 49 121 IPR036638 GO:0046983(InterPro)
Cone6ag0508 329 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 49 123 IPR036638 GO:0046983(InterPro)
Cone6ag0508 329 SMART finulus 57 107 IPR011598 GO:0046983(InterPro)
Cone6ag0508 329 MobiDBLite consensus disorder prediction 25 45 - -
Cone6ag0508 329 Pfam Helix-loop-helix DNA-binding domain 53 102 IPR011598 GO:0046983(InterPro)
Cone6ag0508 329 MobiDBLite consensus disorder prediction 291 329 - -
Cone6ag0508 329 FunFam BHLH domain class transcription factor 49 121 - -
Cone6ag0508 329 MobiDBLite consensus disorder prediction 314 329 - -
Cone6ag0508 329 PANTHER BES1-INTERACTING MYC-LIKE PROTEIN 5 329 IPR044295 GO:0003700(InterPro)|GO:0006351(InterPro)|GO:0046983(InterPro)
Cone6ag0508 329 MobiDBLite consensus disorder prediction 1 64 - -
Cone6ag0508 329 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 51 101 IPR011598 GO:0046983(InterPro)
Cone6ag0508 329 CDD bHLH_AtBIM_like 50 126 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag0021 Cone-Chr13:129915 Cone6ag0508 Cone-Chr6:2524471 7.21E-55 wgd
Cone18ag1151 Cone-Chr18:8275206 Cone6ag0508 Cone-Chr6:2524471 3.28E-43 wgd
Cone19ag0030 Cone-Chr19:214741 Cone6ag0508 Cone-Chr6:2524471 4.97E-57 wgd
Cone6ag0508 Cone-Chr6:2524471 Cone9ag0519 Cone-Chr9:2483612 9.16E-192 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46295 PF00538 Linker_histone 3.30E-11 CL0123 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag0508 - - - 0.0