Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag0524 ATGGCGACTCAGACTGAGGGTTCACCTGCCGCACAGATAGTGGGAAATGCCTTTGTGCAGCAGTATTATAGTATTCTTCATCAGTCACCTGAAGATGTTCACAAATTCTATCAGGAGTCAAGCATGTTAGGTCGACCGGGACCTGATGGGGTGTTGACATCGGTGACCACGATGCAAGGCATCAATGACAATATAGTTTCCATGGACTACAAGAACTATAAAGTTGAAATCCTGACTGCAGATGCTCAGTGTTCTTTTCAAAGTGGATTGGTTGTTTTAGTCACTGGCTATTTAACTGGAAAGGATAACCTGAGAAGGAAGTTTTCTCAGACTTTCTTTCTAGCCCCACAAGCCAATGGATACTTTGTCTTGAATGACCTTTTTCGTTATGTGGATGAACATGAGGTAGCCAGGGACATTCCTATTGAAGAGGTTATTGAAAGCGCTCCAGCATCTCCTATGACTCCAGATCCTGCTCCCATCAATGCTCCTAATCACCCTGTGCAAGAACAAAGTCTTCCAGTGGAGGATAAGAAGGGGGATGAAGTTAGCCAGATACTAGAGAATGGAAACGTAGTAACTACCGAAAAAAGTATTGTTAGTGAGCTTCCAGTTGCTCTGAGTCAAAATGATGTTCCACCTGCCACTGAGGCACCTTCTCCTAGTATCTCTGAGGATACCCCCAAAAAGTCCTTTGCATCAGTGGTGAATGCGCTGAAGCAGAATGCTGCTCCATTTCATGTGAGAGTTTTCCCTGTTAAACCACCTGCAGCAAAGTTGCAGCTAGTTACACCTCCTGAAGTTCCAGCTCCTACCAGCAATAATGTGGTGGTAAAGAGTGAAGAGCCCGCAGCCAAAACTTATGCCATATTTGTACCAAATTTGCCCATGACTGCTACTGTTGAAGAACTTCAAGAACTTTTTAGCAAATTTGGATCCATAAAAACTGATGGTATCCAAGTTAGAAGCAACAAGGGTTCATGCTTTGGTTTTGTTGAATTTGAATCTGCCACTTCAATGCAAGATGCGCTTAAGGCATCTCCCATCACATTCGTCAACCGGAAGCTTTTCATTGAAGAAAGACGAGCAAACAATGACAACAAAAGTGGAGGGAGGTTCCCATCAGGACGTGGTGGTTACAGAGGTGACAATAATTGGAATGAGAATTATAGGGGCCGAGGGAACTTCAGTGGAGGCCGTGGTCAAGGGAGAGATGATTTTGGAAGACGTGGTGGTGCGGGATCCACTAGACCACGAGGAAATTTTGAAGGTAACGGACCACGTGGAAATTTTGAAGGTAACGGGCCACGTGGAAATTTTGAAGGTAATGGACAGGTATTCCAGAAGATGGCTTCGCAGAACTCAGTTGGAAGATTTTCCCGTGAAACAGTGGCCGGACAATAA 1404 44.66 MATQTEGSPAAQIVGNAFVQQYYSILHQSPEDVHKFYQESSMLGRPGPDGVLTSVTTMQGINDNIVSMDYKNYKVEILTADAQCSFQSGLVVLVTGYLTGKDNLRRKFSQTFFLAPQANGYFVLNDLFRYVDEHEVARDIPIEEVIESAPASPMTPDPAPINAPNHPVQEQSLPVEDKKGDEVSQILENGNVVTTEKSIVSELPVALSQNDVPPATEAPSPSISEDTPKKSFASVVNALKQNAAPFHVRVFPVKPPAAKLQLVTPPEVPAPTSNNVVVKSEEPAAKTYAIFVPNLPMTATVEELQELFSKFGSIKTDGIQVRSNKGSCFGFVEFESATSMQDALKASPITFVNRKLFIEERRANNDNKSGGRFPSGRGGYRGDNNWNENYRGRGNFSGGRGQGRDDFGRRGGAGSTRPRGNFEGNGPRGNFEGNGPRGNFEGNGQVFQKMASQNSVGRFSRETVAGQ 467
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2605048 2608676 + Conep06aG0053600.1 Cone6ag0524 439408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag0524 467 CDD RRM_SF 290 359 - -
Cone6ag0524 467 SMART rrm1_1 289 359 IPR000504 GO:0003723(InterPro)
Cone6ag0524 467 MobiDBLite consensus disorder prediction 150 182 - -
Cone6ag0524 467 Gene3D - 279 421 IPR012677 -
Cone6ag0524 467 Gene3D - 3 134 - -
Cone6ag0524 467 SUPERFAMILY RNA-binding domain, RBD 288 391 IPR035979 GO:0003676(InterPro)
Cone6ag0524 467 SUPERFAMILY NTF2-like 11 131 IPR032710 -
Cone6ag0524 467 MobiDBLite consensus disorder prediction 213 229 - -
Cone6ag0524 467 MobiDBLite consensus disorder prediction 363 467 - -
Cone6ag0524 467 CDD NTF2 11 132 IPR018222 -
Cone6ag0524 467 MobiDBLite consensus disorder prediction 445 467 - -
Cone6ag0524 467 Pfam RNA recognition motif 290 346 IPR000504 GO:0003723(InterPro)
Cone6ag0524 467 ProSiteProfiles Nuclear transport factor 2 domain profile. 14 130 IPR018222 -
Cone6ag0524 467 MobiDBLite consensus disorder prediction 210 229 - -
Cone6ag0524 467 PANTHER RAS GTPASE-ACTIVATING PROTEIN-BINDING PROTEIN 4 409 IPR039539 GO:0003729(PANTHER)|GO:0005829(PANTHER)|GO:1990904(PANTHER)
Cone6ag0524 467 Pfam Nuclear transport factor 2 (NTF2) domain 14 130 IPR002075 -
Cone6ag0524 467 FunFam Nuclear transport factor 2 family protein 5 134 - -
Cone6ag0524 467 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 288 363 IPR000504 GO:0003723(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag1150 Cone-Chr4:9859304 Cone6ag0524 Cone-Chr6:2605048 9.49E-78 dispersed
Cone6ag0524 Cone-Chr6:2605048 Cone7ag0978 Cone-Chr7:7572286 4.10E-66 dispersed
Cone13ag0032 Cone-Chr13:208087 Cone6ag0524 Cone-Chr6:2605048 4.34E-87 wgd
Cone19ag0041 Cone-Chr19:280350 Cone6ag0524 Cone-Chr6:2605048 1.23E-90 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag0524 K24983 - gmx:100805610 405.601