Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag0524 ATGGCGACTCAGACTGAGGGTTCACCTGCCGCACAGATAGTGGGAAATGCCTTTGTGCAGCAGTATTATAGTATTCTTCATCAGTCACCTGAAGATGTTCACAAATTCTATCAGGAGTCAAGCATGTTAGGTCGACCGGGACCTGATGGGGTGTTGACATCGGTGACCACGATGCAAGGCATCAATGACAATATAGTTTCCATGGACTACAAGAACTATAAAGTTGAAATCCTGACTGCAGATGCTCAGTGTTCTTTTCAAAGTGGATTGGTTGTTTTAGTCACTGGCTATTTAACTGGAAAGGATAACCTGAGAAGGAAGTTTTCTCAGACTTTCTTTCTAGCCCCACAAGCCAATGGATACTTTGTCTTGAATGACCTTTTTCGTTATGTGGATGAACATGAGGTAGCCAGGGACATTCCTATTGAAGAGGTTATTGAAAGCGCTCCAGCATCTCCTATGACTCCAGATCCTGCTCCCATCAATGCTCCTAATCACCCTGTGCAAGAACAAAGTCTTCCAGTGGAGGATAAGAAGGGGGATGAAGTTAGCCAGATACTAGAGAATGGAAACGTAGTAACTACCGAAAAAAGTATTGTTAGTGAGCTTCCAGTTGCTCTGAGTCAAAATGATGTTCCACCTGCCACTGAGGCACCTTCTCCTAGTATCTCTGAGGATACCCCCAAAAAGTCCTTTGCATCAGTGGTGAATGCGCTGAAGCAGAATGCTGCTCCATTTCATGTGAGAGTTTTCCCTGTTAAACCACCTGCAGCAAAGTTGCAGCTAGTTACACCTCCTGAAGTTCCAGCTCCTACCAGCAATAATGTGGTGGTAAAGAGTGAAGAGCCCGCAGCCAAAACTTATGCCATATTTGTACCAAATTTGCCCATGACTGCTACTGTTGAAGAACTTCAAGAACTTTTTAGCAAATTTGGATCCATAAAAACTGATGGTATCCAAGTTAGAAGCAACAAGGGTTCATGCTTTGGTTTTGTTGAATTTGAATCTGCCACTTCAATGCAAGATGCGCTTAAGGCATCTCCCATCACATTCGTCAACCGGAAGCTTTTCATTGAAGAAAGACGAGCAAACAATGACAACAAAAGTGGAGGGAGGTTCCCATCAGGACGTGGTGGTTACAGAGGTGACAATAATTGGAATGAGAATTATAGGGGCCGAGGGAACTTCAGTGGAGGCCGTGGTCAAGGGAGAGATGATTTTGGAAGACGTGGTGGTGCGGGATCCACTAGACCACGAGGAAATTTTGAAGGTAACGGACCACGTGGAAATTTTGAAGGTAACGGGCCACGTGGAAATTTTGAAGGTAATGGACAGGTATTCCAGAAGATGGCTTCGCAGAACTCAGTTGGAAGATTTTCCCGTGAAACAGTGGCCGGACAATAA 1404 44.66 MATQTEGSPAAQIVGNAFVQQYYSILHQSPEDVHKFYQESSMLGRPGPDGVLTSVTTMQGINDNIVSMDYKNYKVEILTADAQCSFQSGLVVLVTGYLTGKDNLRRKFSQTFFLAPQANGYFVLNDLFRYVDEHEVARDIPIEEVIESAPASPMTPDPAPINAPNHPVQEQSLPVEDKKGDEVSQILENGNVVTTEKSIVSELPVALSQNDVPPATEAPSPSISEDTPKKSFASVVNALKQNAAPFHVRVFPVKPPAAKLQLVTPPEVPAPTSNNVVVKSEEPAAKTYAIFVPNLPMTATVEELQELFSKFGSIKTDGIQVRSNKGSCFGFVEFESATSMQDALKASPITFVNRKLFIEERRANNDNKSGGRFPSGRGGYRGDNNWNENYRGRGNFSGGRGQGRDDFGRRGGAGSTRPRGNFEGNGPRGNFEGNGPRGNFEGNGQVFQKMASQNSVGRFSRETVAGQ 467
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2605048 2608676 + Conep06aG0053600.1 Cone6ag0524 439408

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag0524 467 CDD RRM_SF 290 359 - -
Cone6ag0524 467 SMART rrm1_1 289 359 IPR000504 GO:0003723(InterPro)
Cone6ag0524 467 MobiDBLite consensus disorder prediction 150 182 - -
Cone6ag0524 467 Gene3D - 279 421 IPR012677 -
Cone6ag0524 467 Gene3D - 3 134 - -
Cone6ag0524 467 SUPERFAMILY RNA-binding domain, RBD 288 391 IPR035979 GO:0003676(InterPro)
Cone6ag0524 467 SUPERFAMILY NTF2-like 11 131 IPR032710 -
Cone6ag0524 467 MobiDBLite consensus disorder prediction 213 229 - -
Cone6ag0524 467 MobiDBLite consensus disorder prediction 363 467 - -
Cone6ag0524 467 CDD NTF2 11 132 IPR018222 -
Cone6ag0524 467 MobiDBLite consensus disorder prediction 445 467 - -
Cone6ag0524 467 Pfam RNA recognition motif 290 346 IPR000504 GO:0003723(InterPro)
Cone6ag0524 467 ProSiteProfiles Nuclear transport factor 2 domain profile. 14 130 IPR018222 -
Cone6ag0524 467 MobiDBLite consensus disorder prediction 210 229 - -
Cone6ag0524 467 PANTHER RAS GTPASE-ACTIVATING PROTEIN-BINDING PROTEIN 4 409 IPR039539 GO:0003729(PANTHER)|GO:0005829(PANTHER)|GO:1990904(PANTHER)
Cone6ag0524 467 Pfam Nuclear transport factor 2 (NTF2) domain 14 130 IPR002075 -
Cone6ag0524 467 FunFam Nuclear transport factor 2 family protein 5 134 - -
Cone6ag0524 467 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 288 363 IPR000504 GO:0003723(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag0524 K24983 - - gmx:100805610 405.601
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag1150 Cone-Chr4:9859304 Cone6ag0524 Cone-Chr6:2605048 9.49E-78 dispersed
Cone6ag0524 Cone-Chr6:2605048 Cone7ag0978 Cone-Chr7:7572286 4.10E-66 dispersed
Cone13ag0032 Cone-Chr13:208087 Cone6ag0524 Cone-Chr6:2605048 4.34E-87 wgd
Cone19ag0041 Cone-Chr19:280350 Cone6ag0524 Cone-Chr6:2605048 1.23E-90 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g31 . Blo16g01084 Bda01g02126 . Bpe13g01372 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0524 . . . . . . . . . . . . Bma06g00740 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0018106 1 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 5