Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag0525 ATGATAACAATTTCTTGCTCTTTCAGAGAGAAGATGAAACGCTTTCTTCTGTTTTGTAGAGCTCTCATTATCCTGGTTTCGATCTATCTCAGCTGTGTTTCCTCTTCAATTCTAGCGGAATCATCTTCTGAAAAATCTATTTTGCTGGAATTCAAGGCCTCCGTTTCTGACCCATCTGGAATTCTTTCCAGCTGGGATTCTAACAGCTCTGATTACTGTTCTTATTGGCATGGAGTTTCCTGCGACTCGGATTTCAGGGTTTCCTCGCTCAATATCAGTGGTGCTACAGACTATGAAGAAGAAGGTAAGTCTAAGCATTTTTCTTACCCTAAGCTTTCTCTGTTTCCGTATCATCATGGTTTTGGAATTAGGAGGATTTGTGCACCCGGGAATCGGAAATTAGTGGGTAAAATTTCACCTGCTATTGGGAAACTCACTGTGCTTAGGGTTTTATCACTTCCTTGTCATGATTTTAGGGGTGAAATCCCTAGGGAAATTTTGGGTATGGAGAAACTGAAAGTCCTTGATCTTAATGCAAATTCTTTGAATGGAGAATTACCGGATCGATTTGCGGGTTTGAGAGGGTTGAAAATTTTTGATCTTGGGTTTAATAGAATTTATGGGGAGATACCCTTATCGTTTTCGAAATGTAGTCATTTAGAGGTCCTTAATCTGGCTGGTAATCGATTTAATGGGTCATTGCCAAAAAGTCTTGCCAAATTCAAATCTCTTCTCATTCTCGATTTAAGTGGGAACAAATTCCAAGGCCGAATTCCAACTGAGATTAGTCGTTTGAAATATCTCAAGTATCTTTCCCTTGCTAGTAACAACCTTTCTTCTCTAATACCGTCAAGCTTCATACAGTTACGTTTCCTTGAAGTGTTAAACGTTTCTTCGAACTCGCTTTCCGGAGAGATTCCTCAAGGCCTAGCTCTCTTGAGAAAATTGACCGCTCTTCATCTTGACAACAATAAACTCTCTGGAAAGATCCCATCAGGTTTAGTCAACTCAATCTCAATCTCTTCATTTTGCGTGTCTTTCAATAATCTGTCAGAATCATTTCCGTTGAACAATGTTGTAAAGAAGAGCTGTGGCAGTGTTATTCTCGGCCGGGGCCTGTCTTTCTATTCTCGCCGTTTTCTTTCCCGTAAGTTATCTTCTTTGGATTCATCAAGCTCCACTGTTAAAGATTCTTCTCAAAGTAAGAAACTAAACTCAATTGAGGTAGTATCCATAGTGTCTGCATCAGCAATCATGATGGTTCTTCTAGCTCTAATCATCCTCTTCTTCTACACAAGAAAATTGGCTCCACGCTCAAACATCCGGGTTCCCGAATCAAGAGAGATCACTGTATTCTCTGACGTTGGAGTCCCCTTGACCTATGACATTATTGTTCGGGCAACAAGAAATTTCAGCACTGCAAATTGCATCGGAAATGGAGGATTTGGGGCCACTTACAAGGCAGAAATATCTCCGGGAAATCTAGTGGCAGTAAAAAGGCTCGCCATTGGACGGTGCCAAGGGGTCCAACAATTCCATGCGGAAATCCAGACCCTAGAAAGGGTCAGGCACAGAAATCTCGTGACCTTAATTGGCTACCATGCCAGTGAAGATGAAATGTTCTTAATTTACAACTTTCTGCCCGGTGGCAATTTGGAAAATTTCATCCAAGAGAGATCCACTAGAGCCGTCGATTGGAAGATTCTTCACAAGATTGCTCTAGACATAGCCCAAGCGCTTTCTTATCTTCACAACCAATGCAATCCTAGGGTCCTTCACCGTGACATAAAGCCAAGCAACATACTTTTGGACAATGAGTTCAATGCTTACTTGTCCGATTTTGGTTTGTCTAGACTTATAGGAGCTTCTGAGACACATGTGACAACTGGCGTGGCAGGTACTTTTGGTTATGTGGCCCCGGAATATGCGATGACATGTCGTGTTTCTGACAAGGTGGATGTTTACAGTTATGGGGTTGTTTTGCTTGAGTTGATATCGGATAAGAAAGCTTTAGATCCTTCATTTTCTTCTCATGCTAATGGCTTCAACATCGTTTCATGGGCCCATATTCAGTTACAGGCCGGACGGGCTAAGGAGGTCTTTACGGGAGGGTTGTGGGAGACAGGCCCACATGGTCATCTGGTGGAGACACTGCATTTGGCTATTATGTGCACGGATGAAACGCTTTCTCGTAGACCTACAATGAAGCAGGTCGTTCATACGCTGAAGCGGATTAAACTCGGATCGAGCTAG 2253 42.39 MITISCSFREKMKRFLLFCRALIILVSIYLSCVSSSILAESSSEKSILLEFKASVSDPSGILSSWDSNSSDYCSYWHGVSCDSDFRVSSLNISGATDYEEEGKSKHFSYPKLSLFPYHHGFGIRRICAPGNRKLVGKISPAIGKLTVLRVLSLPCHDFRGEIPREILGMEKLKVLDLNANSLNGELPDRFAGLRGLKIFDLGFNRIYGEIPLSFSKCSHLEVLNLAGNRFNGSLPKSLAKFKSLLILDLSGNKFQGRIPTEISRLKYLKYLSLASNNLSSLIPSSFIQLRFLEVLNVSSNSLSGEIPQGLALLRKLTALHLDNNKLSGKIPSGLVNSISISSFCVSFNNLSESFPLNNVVKKSCGSVILGRGLSFYSRRFLSRKLSSLDSSSSTVKDSSQSKKLNSIEVVSIVSASAIMMVLLALIILFFYTRKLAPRSNIRVPESREITVFSDVGVPLTYDIIVRATRNFSTANCIGNGGFGATYKAEISPGNLVAVKRLAIGRCQGVQQFHAEIQTLERVRHRNLVTLIGYHASEDEMFLIYNFLPGGNLENFIQERSTRAVDWKILHKIALDIAQALSYLHNQCNPRVLHRDIKPSNILLDNEFNAYLSDFGLSRLIGASETHVTTGVAGTFGYVAPEYAMTCRVSDKVDVYSYGVVLLELISDKKALDPSFSSHANGFNIVSWAHIQLQAGRAKEVFTGGLWETGPHGHLVETLHLAIMCTDETLSRRPTMKQVVHTLKRIKLGSS 750
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2608907 2611507 - Conep06aG0053700.1 Cone6ag0525 439409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag0525 750 CDD STKc_IRAK 477 745 - -
Cone6ag0525 750 Gene3D Ribonuclease Inhibitor 36 118 IPR032675 -
Cone6ag0525 750 ProSiteProfiles Protein kinase domain profile. 471 743 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone6ag0525 750 SMART serkin_6 471 743 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone6ag0525 750 Pfam Leucine rich repeat N-terminal domain 42 82 IPR013210 -
Cone6ag0525 750 Pfam Protein kinase domain 474 740 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone6ag0525 750 SUPERFAMILY Protein kinase-like (PK-like) 447 742 IPR011009 -
Cone6ag0525 750 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 547 750 - -
Cone6ag0525 750 FunFam Inactive leucine-rich repeat receptor-like protein kinase 164 260 - -
Cone6ag0525 750 Gene3D Transferase(Phosphotransferase) domain 1 547 747 - -
Cone6ag0525 750 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 261 354 - -
Cone6ag0525 750 Gene3D Phosphorylase Kinase; domain 1 434 546 - -
Cone6ag0525 750 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 435 546 - -
Cone6ag0525 750 SMART LRR_typ_2 289 312 IPR003591 -
Cone6ag0525 750 SMART LRR_typ_2 169 192 IPR003591 -
Cone6ag0525 750 SMART LRR_typ_2 265 288 IPR003591 -
Cone6ag0525 750 SMART LRR_typ_2 313 337 IPR003591 -
Cone6ag0525 750 Gene3D Ribonuclease Inhibitor 128 369 IPR032675 -
Cone6ag0525 750 PANTHER LEUCINE RICH REPEAT KINASE 2 131 746 IPR051420 -
Cone6ag0525 750 SUPERFAMILY L domain-like 42 355 - -
Cone6ag0525 750 ProSitePatterns Serine/Threonine protein kinases active-site signature. 591 603 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone6ag0525 750 Pfam Leucine Rich Repeat 171 193 IPR001611 GO:0005515(InterPro)
Cone6ag0525 750 Pfam Leucine Rich Repeat 219 240 IPR001611 GO:0005515(InterPro)
Cone6ag0525 750 Pfam Leucine Rich Repeat 243 265 IPR001611 GO:0005515(InterPro)
Cone6ag0525 750 Pfam Leucine rich repeat 267 326 IPR001611 GO:0005515(InterPro)
Cone6ag0525 750 ProSitePatterns Protein kinases ATP-binding region signature. 477 499 IPR017441 GO:0005524(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone6ag0525 Cone-Chr6:2608907 Cone5ag0856 Cone-Chr5:3659828 2.12E-68 dispersed
Cone13ag0906 Cone-Chr13:7982991 Cone6ag0525 Cone-Chr6:2608907 5.54E-175 wgd
Cone18ag1137 Cone-Chr18:8197882 Cone6ag0525 Cone-Chr6:2608907 1.27E-162 wgd
Cone19ag0902 Cone-Chr19:7030483 Cone6ag0525 Cone-Chr6:2608907 1.35E-175 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82921 PF12428 DUF3675 3.90E-45 No_clan Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag0525 - - - 0.0