Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag0539 ATGTTCAACACAGTGTTGGGAAAGAAAATTGCTATTATTGGATTCGCCTTTAAGAAAGATACAGGGGATACTAGAGAGACACCTGCAATTGATGTGTGTAAAGGGCTCATAGGAGATAAAGCAACTTTAAGCATATATGATCCGCAAGTTTCTGAGGACCAGATCCAGAGAGATCTTTCAATGAAGAAGTTTGATTGGGACCATCCTGTTCATCTTCAGCCCATGAGCCCTACTGCAAAAAAGCAAGTTAGTGTTGTTTGGGATGCTTATGAGGCAACAAAAGATGCTCATGGAGTTTGCATTTTGACCGAGTGGTATGAATTCAAGAAGCTTGATTATCAGAAGATTTACGATGATATGCAGAAACCAGCATTTGTTTTTGACGGCCAGAGTGTTGTAGATGCTGAGAAGCTGAGGCAGATAGGGTTTATCGTTTACTCAATTGGTAAGCCGCTCGATCACTGGTTCAAGGATATTCCGGCAGTGGCTTAA 492 41.46 MFNTVLGKKIAIIGFAFKKDTGDTRETPAIDVCKGLIGDKATLSIYDPQVSEDQIQRDLSMKKFDWDHPVHLQPMSPTAKKQVSVVWDAYEATKDAHGVCILTEWYEFKKLDYQKIYDDMQKPAFVFDGQSVVDAEKLRQIGFIVYSIGKPLDHWFKDIPAVA 163
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
6 2660483 2660974 + Conep06aG0055200.1 Cone6ag0539 439423
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag0539 163 SUPERFAMILY UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 2 146 IPR036220 -
Cone6ag0539 163 Pfam UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain 11 134 IPR014027 GO:0016616(InterPro)|GO:0051287(InterPro)
Cone6ag0539 163 FunFam Putative UDP-glucose 6-dehydrogenase 1 160 - -
Cone6ag0539 163 Gene3D - 1 162 - -
Cone6ag0539 163 PANTHER UDP-GLUCOSE DEHYDROGENASE/UDP-MANNAC DEHYDROGENASE 1 154 IPR028356 GO:0003979(InterPro)|GO:0005634(PANTHER)|GO:0006024(PANTHER)
Cone6ag0539 163 SMART UDPG_MGDP_dh_C_a_2_a 11 135 IPR014027 GO:0016616(InterPro)|GO:0051287(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag0506 Cone-Chr4:2255719 Cone6ag0539 Cone-Chr6:2660483 2.24E-99 dispersed
Cone6ag0539 Cone-Chr6:2660483 Cone7ag0481 Cone-Chr7:2209481 4.92E-98 dispersed
Cone13ag0043 Cone-Chr13:260371 Cone6ag0539 Cone-Chr6:2660483 2.54E-22 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag0539 K00012 - mdm:103402836 300.827