Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag0539 ATGTTCAACACAGTGTTGGGAAAGAAAATTGCTATTATTGGATTCGCCTTTAAGAAAGATACAGGGGATACTAGAGAGACACCTGCAATTGATGTGTGTAAAGGGCTCATAGGAGATAAAGCAACTTTAAGCATATATGATCCGCAAGTTTCTGAGGACCAGATCCAGAGAGATCTTTCAATGAAGAAGTTTGATTGGGACCATCCTGTTCATCTTCAGCCCATGAGCCCTACTGCAAAAAAGCAAGTTAGTGTTGTTTGGGATGCTTATGAGGCAACAAAAGATGCTCATGGAGTTTGCATTTTGACCGAGTGGTATGAATTCAAGAAGCTTGATTATCAGAAGATTTACGATGATATGCAGAAACCAGCATTTGTTTTTGACGGCCAGAGTGTTGTAGATGCTGAGAAGCTGAGGCAGATAGGGTTTATCGTTTACTCAATTGGTAAGCCGCTCGATCACTGGTTCAAGGATATTCCGGCAGTGGCTTAA 492 41.46 MFNTVLGKKIAIIGFAFKKDTGDTRETPAIDVCKGLIGDKATLSIYDPQVSEDQIQRDLSMKKFDWDHPVHLQPMSPTAKKQVSVVWDAYEATKDAHGVCILTEWYEFKKLDYQKIYDDMQKPAFVFDGQSVVDAEKLRQIGFIVYSIGKPLDHWFKDIPAVA 163
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2660483 2660974 + Conep06aG0055200.1 Cone6ag0539 439423

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag0539 163 SUPERFAMILY UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 2 146 IPR036220 -
Cone6ag0539 163 Pfam UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain 11 134 IPR014027 GO:0016616(InterPro)|GO:0051287(InterPro)
Cone6ag0539 163 FunFam Putative UDP-glucose 6-dehydrogenase 1 160 - -
Cone6ag0539 163 Gene3D - 1 162 - -
Cone6ag0539 163 PANTHER UDP-GLUCOSE DEHYDROGENASE/UDP-MANNAC DEHYDROGENASE 1 154 IPR028356 GO:0003979(InterPro)|GO:0005634(PANTHER)|GO:0006024(PANTHER)
Cone6ag0539 163 SMART UDPG_MGDP_dh_C_a_2_a 11 135 IPR014027 GO:0016616(InterPro)|GO:0051287(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag0539 K00012 - - mdm:103402836 300.827
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag0506 Cone-Chr4:2255719 Cone6ag0539 Cone-Chr6:2660483 2.24E-99 dispersed
Cone6ag0539 Cone-Chr6:2660483 Cone7ag0481 Cone-Chr7:2209481 4.92E-98 dispersed
Cone13ag0043 Cone-Chr13:260371 Cone6ag0539 Cone-Chr6:2660483 2.54E-22 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g58 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone19ag0907 Cone6ag0539 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0053936 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1