Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag0540 ATGGGTTCCAAACGATCTTTTGACAGTGAAGAGTTCGAGGAGATTCCGTGTAAGCACCCTAGACAACATGAAAGTATCAACAAGCCAACCTCATTTTCTGAGTTGACTCCTTTGTATCTCTTCCCCCAGAAACTTGAATTTTCAGGTCAGAATGTGGGAGGCTTTCACGAGCTTCAATGGCATGATGCTCATGAAAAGGATACTGTTACTGAAATCTCAGATTTTGATGACAAGGATCTTGAGAGCAGTAACCCTTTCTCATGGGTCACCAGTATTTCTAGCGAAGAAGAAACTGGGTCCGGAGCAACTACTTTGACTCCATTGTCACCAGAACTCGGTGAATATCATTTCCCTCGAAGAACATTTTCTCCTAGAAAGCAAGTTCCTGTTGGACCGAATCATCAGGCAAGTCTTCCAATATGGTGTGGGCATATTGAAGGGAGCAAGTTGGACATCAATGATAATTTAAAGGAGGAGAAACTGATGGGGACTTGTGTTATTCCAATGCCATACTTGAATTTGCAAGACCAAGAAGATGTAAAAAGTGGAGAATCCCAAGTGAATTGTGACTGCATGGATGAGGGATCTGTTAGATGTATACGGCAACATATCACAGAATCAAGGGAAAAGCTGAGGATAACTCTTGGCGATGAAAAGTTTGTGAATTTGGGGTTCTCAGACATGGGTGAGGAAGTTATTTGCAAATGGAATGAAGAAGAAGAACAGATGTTTCATGATACCGTCTATTCGAATCCTAAATCGTCAGGCCGGAATTTTTGGACTTACCTGTCGGTGGCTTTTCCTTCTCGCAATAAAAAAGAACTTGTTAGCTATTATTTTAATGTATTTATCCTTCGAAGGCGGGCTACTCAGAACCGATCTCAGTTCCTTGATGCTGATAGTGATGATGATGAATGGCAAGGAAGAAGGAATAAGGGTTCTTACAGATTTCGAGTGCAAGAAGAAGATGAAGACTCTGCAATTGAATCACTTGTCGTTCAAGTTGATCATGGTGACCATGAAGCTGATTCCTCTGAAGATGAAGAAAATGGATATATTGATGATGAAAGTGAAGAAGAGGGTGGAGTTGAAGAAGATACAATTGATCCCATTGTTCATAATTTGGACAAGAATGCAGAGAAGGGTCTTCATGGTGGTCAAGATGATTCTTGCATGTCTTTTGAAAGTCAGTTTAAGATGACCGATTTATGTTGTACTGATGATGATACTGTGTCTGAACGGCAGATAACTGGAGTCAAGACTGGGAACGGAAGATCTTTGCGTAGTAACTCCGATGTTTCTGGGTATATTATGTCTGAGCCAAGTGCTATTAAAGCTTGGGATGTTAGGTCGCTTACCCGTCCAGGAGAAGATGCTGATCTTCTACCGACTTGGAAAATGATTGAAGAGATTTTTGGACAAGATGTGGATGTGGAGTTTAACAAGACGGATCATGGGAAAGGCTCCAGTTAG 1473 41.34 MGSKRSFDSEEFEEIPCKHPRQHESINKPTSFSELTPLYLFPQKLEFSGQNVGGFHELQWHDAHEKDTVTEISDFDDKDLESSNPFSWVTSISSEEETGSGATTLTPLSPELGEYHFPRRTFSPRKQVPVGPNHQASLPIWCGHIEGSKLDINDNLKEEKLMGTCVIPMPYLNLQDQEDVKSGESQVNCDCMDEGSVRCIRQHITESREKLRITLGDEKFVNLGFSDMGEEVICKWNEEEEQMFHDTVYSNPKSSGRNFWTYLSVAFPSRNKKELVSYYFNVFILRRRATQNRSQFLDADSDDDEWQGRRNKGSYRFRVQEEDEDSAIESLVVQVDHGDHEADSSEDEENGYIDDESEEEGGVEEDTIDPIVHNLDKNAEKGLHGGQDDSCMSFESQFKMTDLCCTDDDTVSERQITGVKTGNGRSLRSNSDVSGYIMSEPSAIKAWDVRSLTRPGEDADLLPTWKMIEEIFGQDVDVEFNKTDHGKGSS 490
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2662307 2665544 + Conep06aG0055300.1 Cone6ag0540 439424

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag0540 490 MobiDBLite consensus disorder prediction 91 107 - -
Cone6ag0540 490 MobiDBLite consensus disorder prediction 342 365 - -
Cone6ag0540 490 CDD SANT 235 283 IPR001005 -
Cone6ag0540 490 MobiDBLite consensus disorder prediction 91 110 - -
Cone6ag0540 490 MobiDBLite consensus disorder prediction 1 29 - -
Cone6ag0540 490 PANTHER DNA BINDING PROTEIN 1 477 - -
Cone6ag0540 490 MobiDBLite consensus disorder prediction 1 25 - -
Cone6ag0540 490 MobiDBLite consensus disorder prediction 337 366 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag0540 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag0434 Cone-Chr11:2182942 Cone6ag0540 Cone-Chr6:2662307 5.92E-27 dispersed
Cone14ag0369 Cone-Chr14:1724663 Cone6ag0540 Cone-Chr6:2662307 1.62E-29 dispersed
Cone15ag0406 Cone-Chr15:1907204 Cone6ag0540 Cone-Chr6:2662307 3.08E-27 dispersed
Cone18ag1072 Cone-Chr18:7879200 Cone6ag0540 Cone-Chr6:2662307 2.10E-29 dispersed
Cone6ag0540 Cone-Chr6:2662307 Cone9ag0791 Cone-Chr9:3797182 2.35E-26 dispersed
Cone13ag0045 Cone-Chr13:265074 Cone6ag0540 Cone-Chr6:2662307 9.03E-71 wgd
Cone19ag0908 Cone-Chr19:7062956 Cone6ag0540 Cone-Chr6:2662307 7.35E-89 wgd
Cone19ag0050 Cone-Chr19:325094 Cone6ag0540 Cone-Chr6:2662307 1.99E-68 wgd
Cone6ag0540 Cone-Chr6:2662307 Cone9ag0550 Cone-Chr9:2618445 1.29E-298 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g59 . . . . . . . . . . . . . . . . . . . . . . . . Cla05g02400 Cam05g2576 Cec05g2610 Cco05g2648 Clacu05g2579 Cmu05g2433 Cre05g2550 . Cone19ag0908 Cone6ag0540 Cone9ag0550 Lsi04g00370 . . Cme10g00366 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0029858 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 2