Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag0541 ATGAATGAAAAAGATAAGTCCGATCCAGCAACCGAGTTCAACAGCGGCGCGAGCTGGATGCAGTTTGGAGCAGGCTCCGATAGTGTTTACAGTTTCTTCTCCGGGGGCGATAGTGAGAGCAGTATACTAGGAGACTTCGGCTGGAACTTTGCATCGGACGATGTGGACCGAGCCGGAAGTGAACATGGATGGATCTCCGACTTAGACAGAATCGGTAAGGCCTATAGGTTCAATTTGGCGGGAAATATTGAGGTGCCGCCTGAGATATGTGGCAGCAGAGAGGTTGGAGGATCGGAACCGGTGAATTTGGTAGGAGCGGTTGGTGACGTTTCCACGTCAAATCCGTCGCTGTCTTCGTGCTCGAGCGAAGATCCGCCTGAGAAGTCCACCGGATCAGGAGGGAAACCGCCTGAGATATCTAATAAGGTGGTCCAAAAGAAGGCCGTGAAAATGCGAATCCGGCAACCCCGGGTTGCATTCGTGACAAAGAGCGAAGTTGATAATCTTGAAGACGGTTACAGATGGAGAAAATATGGACAAAAGGCTGTAAAACACAGTCCCTTCCCAAGGAGTTACTATCGCTGCACAAACGGCAAATGTACGGTGAAGAAAAGAGTAGAAAGATCATGGGAAGATCCAAGTATTGTAATAACAACATACGAAGGTCAACACTGCCATGAAACTGTTGGATTTCCCCGAGGTGGGGAATTCATTAGTACTACTCATGATCATGATCAGGCAGCTCCCTTTGGTCCTCGATTATTACTGCCTTCTAATTCCGATCATCACGATCAGATTAATAACCCACGGTTTCACTACTACCCCACCGTACTTCATCGTGATGATCGGCTTCTTGTAACCTCACATGAGTCAAAGTCGCAATCTAACACTCCTTCAGATGAAGGATTGCTCGCAGACATTGTGCCTCCTGGAATGCTTAACAGATCATGA 951 47.95 MNEKDKSDPATEFNSGASWMQFGAGSDSVYSFFSGGDSESSILGDFGWNFASDDVDRAGSEHGWISDLDRIGKAYRFNLAGNIEVPPEICGSREVGGSEPVNLVGAVGDVSTSNPSLSSCSSEDPPEKSTGSGGKPPEISNKVVQKKAVKMRIRQPRVAFVTKSEVDNLEDGYRWRKYGQKAVKHSPFPRSYYRCTNGKCTVKKRVERSWEDPSIVITTYEGQHCHETVGFPRGGEFISTTHDHDQAAPFGPRLLLPSNSDHHDQINNPRFHYYPTVLHRDDRLLVTSHESKSQSNTPSDEGLLADIVPPGMLNRS 316
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2670377 2672222 - Conep06aG0055400.1 Cone6ag0541 439425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag0541 316 SMART WRKY_cls 169 228 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone6ag0541 316 SUPERFAMILY WRKY DNA-binding domain 161 227 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone6ag0541 316 ProSiteProfiles WRKY domain profile. 164 229 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone6ag0541 316 MobiDBLite consensus disorder prediction 288 316 - -
Cone6ag0541 316 Gene3D WRKY domain 156 222 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone6ag0541 316 Pfam WRKY DNA -binding domain 170 227 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone6ag0541 316 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 121 239 IPR044810 GO:0003700(InterPro)
Cone6ag0541 316 MobiDBLite consensus disorder prediction 106 140 - -
Cone6ag0541 316 MobiDBLite consensus disorder prediction 107 128 - -
Cone6ag0541 316 FunFam WRKY transcription factor 57 155 229 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone3ag0353 Cone-Chr3:1783575 Cone6ag0541 Cone-Chr6:2670377 4.84E-23 dispersed
Cone5ag1608 Cone-Chr5:11290360 Cone6ag0541 Cone-Chr6:2670377 2.61E-37 dispersed
Cone6ag0541 Cone-Chr6:2670377 Cone6ag0908 Cone-Chr6:4663736 1.52E-34 dispersed
Cone13ag0914 Cone-Chr13:8023565 Cone6ag0541 Cone-Chr6:2670377 6.64E-77 wgd
Cone19ag0910 Cone-Chr19:7071382 Cone6ag0541 Cone-Chr6:2670377 5.39E-79 wgd
Cone2ag0536 Cone-Chr2:2960579 Cone6ag0541 Cone-Chr6:2670377 2.96E-25 wgd
Cone6ag0541 Cone-Chr6:2670377 Cone9ag0551 Cone-Chr9:2624393 4.03E-172 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46297 PF03097 BRO1 1.60E-105 No_clan Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag0541 - - - 0.0