Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag0546 ATGGAAATGGAGATAGATTCAACGCAAGAACAGAATCGAATCAAGGACGATGATCTATTCAAAGCGGCAGAGACTGGTAACTCTTCCATTTTCCAAAATATCATGCAAGAGCAGCTATCCAAATCTCTCTCTCTGAGAAATGAAGACGGCCGGTCTCTACTTCATGTCGCTGCCTCTTCCGGCCACACCGAGGTTGTGAAGGTGTTTGCAGCTGTTGATGAATCGGCTAGTGTGGTAAATAGTGCTGATGAAGAAGGTTGGGCGCCGATTCACTCTGCTGCTAGCATCGGAAACTTAGACATTGTGGAAATTTTGTTGAGCAGAGGAGCTGATGTGAATTTGAAGAATAATGGAGGTCGAACTGCTCTTCACTATGCTGCCAGTAAAGGATGGTCAAAGATTGCTGAAACTTTGATTTCACATGGCGCCAAAATTAATCTAAAGGACAAGGTTGGATGCACTCCATTGCATAGGGCAGCTAGCACAGGGAACTCAGAATTGTGTGAGCTTTTAATCGAAGAAGGAGCAGATGTTGATGCGGTCGATAAATCTGGCCAAACTCCTCTTATGAATGCTGTAATTTGCCTTGACAAAGATGTAGCTCTCCTTCTAATAAGGCATGGAGCTGATGTAGATGTAGAGGACAAGGAAGGATATACTGTGCTCGGTCGAGCTGCACAGGATCTTAGGCCAGCATTAGTTGATGCTGCTAAGGCTATGCTGGAAGGGTGA 732 45.08 MEMEIDSTQEQNRIKDDDLFKAAETGNSSIFQNIMQEQLSKSLSLRNEDGRSLLHVAASSGHTEVVKVFAAVDESASVVNSADEEGWAPIHSAASIGNLDIVEILLSRGADVNLKNNGGRTALHYAASKGWSKIAETLISHGAKINLKDKVGCTPLHRAASTGNSELCELLIEEGADVDAVDKSGQTPLMNAVICLDKDVALLLIRHGADVDVEDKEGYTVLGRAAQDLRPALVDAAKAMLEG 243
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2690099 2691828 + Conep06aG0055900.1 Cone6ag0546 439430

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag0546 243 ProSiteProfiles Ankyrin repeat profile. 151 183 IPR002110 GO:0005515(InterPro)
Cone6ag0546 243 PANTHER ANKYRIN REPEAT FAMILY A 119 222 - GO:0005634(PANTHER)|GO:0010468(PANTHER)
Cone6ag0546 243 PRINTS Ankyrin repeat signature 50 65 IPR002110 GO:0005515(InterPro)
Cone6ag0546 243 PRINTS Ankyrin repeat signature 101 115 IPR002110 GO:0005515(InterPro)
Cone6ag0546 243 Gene3D - 12 73 IPR036770 -
Cone6ag0546 243 ProSiteProfiles Ankyrin repeat profile. 85 117 IPR002110 GO:0005515(InterPro)
Cone6ag0546 243 ProSiteProfiles Ankyrin repeat region circular profile. 118 150 - -
Cone6ag0546 243 Pfam Ankyrin repeat 185 216 IPR002110 GO:0005515(InterPro)
Cone6ag0546 243 Pfam Ankyrin repeat 49 69 IPR002110 GO:0005515(InterPro)
Cone6ag0546 243 ProSiteProfiles Ankyrin repeat region circular profile. 184 216 - -
Cone6ag0546 243 ProSiteProfiles Ankyrin repeat profile. 49 81 IPR002110 GO:0005515(InterPro)
Cone6ag0546 243 ProSiteProfiles Ankyrin repeat region circular profile. 151 183 - -
Cone6ag0546 243 ProSiteProfiles Ankyrin repeat region circular profile. 49 69 - -
Cone6ag0546 243 ProSiteProfiles Ankyrin repeat profile. 118 150 IPR002110 GO:0005515(InterPro)
Cone6ag0546 243 ProSiteProfiles Ankyrin repeat region circular profile. 85 117 - -
Cone6ag0546 243 Pfam Ankyrin repeats (3 copies) 111 182 IPR002110 GO:0005515(InterPro)
Cone6ag0546 243 Gene3D - 124 242 IPR036770 -
Cone6ag0546 243 Gene3D - 74 123 IPR036770 -
Cone6ag0546 243 SMART ANK_2a 85 114 IPR002110 GO:0005515(InterPro)
Cone6ag0546 243 SMART ANK_2a 184 213 IPR002110 GO:0005515(InterPro)
Cone6ag0546 243 SMART ANK_2a 49 78 IPR002110 GO:0005515(InterPro)
Cone6ag0546 243 SMART ANK_2a 151 180 IPR002110 GO:0005515(InterPro)
Cone6ag0546 243 SMART ANK_2a 118 147 IPR002110 GO:0005515(InterPro)
Cone6ag0546 243 SUPERFAMILY Ankyrin repeat 14 227 IPR036770 -
Cone6ag0546 243 ProSiteProfiles Ankyrin repeat profile. 184 216 IPR002110 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag0546 K06694 - - csv:101208718 377.481
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone6ag0546 Cone-Chr6:2690099 Cone9ag0556 Cone-Chr9:2637863 7.19E-48 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g73 . . . . . Bpe10g00893 . Bma15g00137 . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0546 Cone9ag0556 . . . . Blo06g00924 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009040 2 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 2 1 1 1 1 1 0 1 1 1 0 4 1 32