Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag0546 ATGGAAATGGAGATAGATTCAACGCAAGAACAGAATCGAATCAAGGACGATGATCTATTCAAAGCGGCAGAGACTGGTAACTCTTCCATTTTCCAAAATATCATGCAAGAGCAGCTATCCAAATCTCTCTCTCTGAGAAATGAAGACGGCCGGTCTCTACTTCATGTCGCTGCCTCTTCCGGCCACACCGAGGTTGTGAAGGTGTTTGCAGCTGTTGATGAATCGGCTAGTGTGGTAAATAGTGCTGATGAAGAAGGTTGGGCGCCGATTCACTCTGCTGCTAGCATCGGAAACTTAGACATTGTGGAAATTTTGTTGAGCAGAGGAGCTGATGTGAATTTGAAGAATAATGGAGGTCGAACTGCTCTTCACTATGCTGCCAGTAAAGGATGGTCAAAGATTGCTGAAACTTTGATTTCACATGGCGCCAAAATTAATCTAAAGGACAAGGTTGGATGCACTCCATTGCATAGGGCAGCTAGCACAGGGAACTCAGAATTGTGTGAGCTTTTAATCGAAGAAGGAGCAGATGTTGATGCGGTCGATAAATCTGGCCAAACTCCTCTTATGAATGCTGTAATTTGCCTTGACAAAGATGTAGCTCTCCTTCTAATAAGGCATGGAGCTGATGTAGATGTAGAGGACAAGGAAGGATATACTGTGCTCGGTCGAGCTGCACAGGATCTTAGGCCAGCATTAGTTGATGCTGCTAAGGCTATGCTGGAAGGGTGA 732 45.08 MEMEIDSTQEQNRIKDDDLFKAAETGNSSIFQNIMQEQLSKSLSLRNEDGRSLLHVAASSGHTEVVKVFAAVDESASVVNSADEEGWAPIHSAASIGNLDIVEILLSRGADVNLKNNGGRTALHYAASKGWSKIAETLISHGAKINLKDKVGCTPLHRAASTGNSELCELLIEEGADVDAVDKSGQTPLMNAVICLDKDVALLLIRHGADVDVEDKEGYTVLGRAAQDLRPALVDAAKAMLEG 243
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2690099 2691828 + Conep06aG0055900.1 Cone6ag0546 439430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag0546 243 ProSiteProfiles Ankyrin repeat profile. 151 183 IPR002110 GO:0005515(InterPro)
Cone6ag0546 243 PANTHER ANKYRIN REPEAT FAMILY A 119 222 - GO:0005634(PANTHER)|GO:0010468(PANTHER)
Cone6ag0546 243 PRINTS Ankyrin repeat signature 50 65 IPR002110 GO:0005515(InterPro)
Cone6ag0546 243 PRINTS Ankyrin repeat signature 101 115 IPR002110 GO:0005515(InterPro)
Cone6ag0546 243 Gene3D - 12 73 IPR036770 -
Cone6ag0546 243 ProSiteProfiles Ankyrin repeat profile. 85 117 IPR002110 GO:0005515(InterPro)
Cone6ag0546 243 ProSiteProfiles Ankyrin repeat region circular profile. 118 150 - -
Cone6ag0546 243 Pfam Ankyrin repeat 185 216 IPR002110 GO:0005515(InterPro)
Cone6ag0546 243 Pfam Ankyrin repeat 49 69 IPR002110 GO:0005515(InterPro)
Cone6ag0546 243 ProSiteProfiles Ankyrin repeat region circular profile. 184 216 - -
Cone6ag0546 243 ProSiteProfiles Ankyrin repeat profile. 49 81 IPR002110 GO:0005515(InterPro)
Cone6ag0546 243 ProSiteProfiles Ankyrin repeat region circular profile. 151 183 - -
Cone6ag0546 243 ProSiteProfiles Ankyrin repeat region circular profile. 49 69 - -
Cone6ag0546 243 ProSiteProfiles Ankyrin repeat profile. 118 150 IPR002110 GO:0005515(InterPro)
Cone6ag0546 243 ProSiteProfiles Ankyrin repeat region circular profile. 85 117 - -
Cone6ag0546 243 Pfam Ankyrin repeats (3 copies) 111 182 IPR002110 GO:0005515(InterPro)
Cone6ag0546 243 Gene3D - 124 242 IPR036770 -
Cone6ag0546 243 Gene3D - 74 123 IPR036770 -
Cone6ag0546 243 SMART ANK_2a 85 114 IPR002110 GO:0005515(InterPro)
Cone6ag0546 243 SMART ANK_2a 184 213 IPR002110 GO:0005515(InterPro)
Cone6ag0546 243 SMART ANK_2a 49 78 IPR002110 GO:0005515(InterPro)
Cone6ag0546 243 SMART ANK_2a 151 180 IPR002110 GO:0005515(InterPro)
Cone6ag0546 243 SMART ANK_2a 118 147 IPR002110 GO:0005515(InterPro)
Cone6ag0546 243 SUPERFAMILY Ankyrin repeat 14 227 IPR036770 -
Cone6ag0546 243 ProSiteProfiles Ankyrin repeat profile. 184 216 IPR002110 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone6ag0546 Cone-Chr6:2690099 Cone9ag0556 Cone-Chr9:2637863 7.19E-48 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag0546 K06694 - csv:101208718 377.481