Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag0548 ATGGTGCAGAGTCTGTCATTGTGTACTTCGACATCCTCAATAAATGGCGGGGTTTATGGGTCAAATACTTATGAGAGGAAGCATTTGAAGCTGAGTAAAAATCTTATAGCCTCTATGATTGGTAGAAGTGGAATTTTTCACCGATTCAGACAAGGGTTTTTCTTATCTAGCAAAGCCAATATATCGAGACAGAGAAATTGTGAGGTTAAAGCTGGATGGATGTTTAAAGGGGGTGGGAAGAGGTTGGATGCAAGCTCTGAGTATAGTGACAGAGCTAGTGAGGATATTTTGTTCTTCTTTTTCCAGCTGGACCTAGCAACACGAGTACAGTATGCTTTGAACACAGAGCAGTATGAGATTGCACAACAACTGAGAAACAAGCTGACTGAGGTTGAAGCAGAAGCTATCAAGCAGCAAGATTCAAAAAGGGGATTGTCTTCAAAAAGTGAAGCTCAGGACAAAGCCTTAAGTACTATTTGTCTACGTGGTGACCTGCAGAAAGCTATTGATGGTGAAAATTATGATTTGGCAGCTCAACTGCGGGATGAAATTTCCAAACTGGAAGCAGAGTCCTTAGCTGCATCAGCAAAAGCTCTGGCATATGAAAATGCACAATATTCATTTCGACTGGGGCAGAAAGTGAAGCACAAAATATTTGGCTACAGAGCTGTTGTTTGTGGAATGGATCCAGTGTGCTGCGAATCAAGTTCATGGATGGAGACTGCACAAGTTGAAAAGTTGTCTCAGGGTTCTGCTCAGCCATTTTATCAAGTTTTGGTAGATGTCCGTGCAGATCCTGATCTACTGATCGCATACGTTCCTGAGGAGAATCTTTCAGCCACTGAAGAACCTGACAAGGACAGATTTAATCATCCCTATGTTTCTTTCTTATTTTACGGAATGGATGGAGCGGGAGACTTCATCCCAATCAAGCAATTGCGTGATAAGTACAATAGGCCTCGACATGAAATACCTTTTGATCCACAAGATGATGATAAGAACGATGATTCAGATGCTTGA 1020 41.76 MVQSLSLCTSTSSINGGVYGSNTYERKHLKLSKNLIASMIGRSGIFHRFRQGFFLSSKANISRQRNCEVKAGWMFKGGGKRLDASSEYSDRASEDILFFFFQLDLATRVQYALNTEQYEIAQQLRNKLTEVEAEAIKQQDSKRGLSSKSEAQDKALSTICLRGDLQKAIDGENYDLAAQLRDEISKLEAESLAASAKALAYENAQYSFRLGQKVKHKIFGYRAVVCGMDPVCCESSSWMETAQVEKLSQGSAQPFYQVLVDVRADPDLLIAYVPEENLSATEEPDKDRFNHPYVSFLFYGMDGAGDFIPIKQLRDKYNRPRHEIPFDPQDDDKNDDSDA 339
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2698891 2702977 + Conep06aG0056100.1 Cone6ag0548 439432

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag0548 339 Coils Coil 114 141 - -
Cone6ag0548 339 Coils Coil 177 197 - -
Cone6ag0548 339 Pfam Hemimethylated DNA-binding protein YccV like 207 304 IPR011722 GO:0003677(InterPro)
Cone6ag0548 339 PANTHER YCCV-LIKE DOMAIN-CONTAINING PROTEIN 3 332 IPR053189 -
Cone6ag0548 339 FunFam Clp protease adapter protein ClpF, chloroplastic 203 306 - -
Cone6ag0548 339 NCBIfam heat shock protein HspQ 206 307 IPR011722 GO:0003677(InterPro)
Cone6ag0548 339 MobiDBLite consensus disorder prediction 320 339 - -
Cone6ag0548 339 Gene3D - 204 305 IPR036623 GO:0003677(InterPro)
Cone6ag0548 339 Pfam UvrB/uvrC motif 164 189 IPR001943 GO:0005515(InterPro)
Cone6ag0548 339 SUPERFAMILY YccV-like 207 303 IPR036623 GO:0003677(InterPro)
Cone6ag0548 339 SMART YccV_like_2_a 205 309 IPR011722 GO:0003677(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag0548 - - - - 0.0
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g76 . . . Bda11g01189 Bpe13g01387 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0548 . . . . . . . . Bda11g01189 . . . Bma06g00725 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010259 2 3 0 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 0 1 1 2 1 1 31