Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag0574 ATGGCTGGCCATACAAATGACTATGGCAAGAGATCCAATTTCCAATTGGATAGTCCCGGAAGTGGAGGAAGTAAAAGAAGAAATCCAGGAGAAGACACAAACCAGAACACAATTGGTTCAGAAGACACAGTGTACCGTTATTTGTGTCCTGTCAGAAGAATTGGAAGCATTATCGGAAAAGGCGGTGAGATAGTAAAACAGTTAAGGTCCGAGACTAAATCGAACATTAGAATTGGGGAGACTCTTATGGGATGTGAAGAACGTGTAGTCACTATATACAGTAATTCTGAGGAAAGTAATATCCTTGAAGAGACGGGCGAGTTTATTTCGCCTGCACAAGATGCTTTGTTTAGGGTGCATGATGGGATTGTTGCTGAGGAGCAGATTCAAGCTGATGGAGAGGAATCTGAAGATGTGCAAGAAGTTGTTGTTAGAATGCTTGTGCCCTCTGATCAGATTGGATGTGTCATTGGGAAAGGTGGACAGGTGATTCAGAATATTCGTACTGAGACTCATGCTCAAGTTCGGGTTATAAGAGATGAGTATATGCCTCTTTGTGCTTTGAGGTCTGATGAGCTTCTCCTGATTGTAGGGGAGCCCTCGGCTGTGAGAAATGCTCTGCATTTATTGGCATCTCGTCTTCGTGAAAACCCATCTCGTTCTCAGCATTTGCTCCTCACTTCTTCATCCAACATGTATCAATCTGGTGGACTTTTCATGAATCCAAATGCCGCTGCATCAGCTCTACATTCAGATTACTGGTCCTCTCAAAGGGATGAAGTTTCTGCAAAGGAATTTTCTCTTCGTCTGGTCTGTCCATCTGAAAATGTTGGAGCTGTGATCGGAAAAAGTGGTGTTGTTATCAAGCAAATCAGACAAGAATCAGGAGCCACTATTAAAGTTGACAGCTCTGCCTCCGAAGGAGATGACTGCATCATATTTGTATCAGCCAAGGAGTTCTTTGAAGATCCATCTCCAACCATCAATGCAGCACTGCTTTTGCAACCGAGGTGCAGTTTAAAAGTTGAGAGAGAATCAGGTGGTGATCTAATCACGACCCGTCTCCTCGTTCCAAGCTCACATACTGGATCCCTTATTGGGAAGGGAGGTTCTATAATTTCCGAGATGAGGAACGCTACAAGGGCAAAGATCCTCATTCTGTCCAAGGATAACCTTCCCACTGTCGCATCTGAGGATGAGGATATGGTTCAGATAACAGGAGGACTTGATGCTGCAAGCAGTGCACTTCTACGAGTTACTACAACCTTAAGAGCCAATTACTTTGAAAGAGATGGAAGCTTCTACAAAGGCATGATTGATGGCCCGAGATATGGAAACCGCAATAGTCAAGGTCATGGACAGAAACACTTGTCTCACTCTGGTAGACATGGCTCAAGTGAAATGAGTTCTGGCCTTTCTGAGAATGGTGGTAGAAGTGTTTGA 1443 44.01 MAGHTNDYGKRSNFQLDSPGSGGSKRRNPGEDTNQNTIGSEDTVYRYLCPVRRIGSIIGKGGEIVKQLRSETKSNIRIGETLMGCEERVVTIYSNSEESNILEETGEFISPAQDALFRVHDGIVAEEQIQADGEESEDVQEVVVRMLVPSDQIGCVIGKGGQVIQNIRTETHAQVRVIRDEYMPLCALRSDELLLIVGEPSAVRNALHLLASRLRENPSRSQHLLLTSSSNMYQSGGLFMNPNAAASALHSDYWSSQRDEVSAKEFSLRLVCPSENVGAVIGKSGVVIKQIRQESGATIKVDSSASEGDDCIIFVSAKEFFEDPSPTINAALLLQPRCSLKVERESGGDLITTRLLVPSSHTGSLIGKGGSIISEMRNATRAKILILSKDNLPTVASEDEDMVQITGGLDAASSALLRVTTTLRANYFERDGSFYKGMIDGPRYGNRNSQGHGQKHLSHSGRHGSSEMSSGLSENGGRSV 480
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2803769 2807697 - Conep06aG0058700.1 Cone6ag0574 439458

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag0574 480 MobiDBLite consensus disorder prediction 443 480 - -
Cone6ag0574 480 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 346 424 IPR036612 GO:0003723(InterPro)
Cone6ag0574 480 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 134 218 IPR036612 GO:0003723(InterPro)
Cone6ag0574 480 Pfam KH domain 144 210 IPR004088 GO:0003723(InterPro)
Cone6ag0574 480 Pfam KH domain 352 416 IPR004088 GO:0003723(InterPro)
Cone6ag0574 480 Pfam KH domain 268 317 IPR004088 GO:0003723(InterPro)
Cone6ag0574 480 Pfam KH domain 45 97 IPR004088 GO:0003723(InterPro)
Cone6ag0574 480 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 263 317 IPR036612 GO:0003723(InterPro)
Cone6ag0574 480 CDD KH-I_PEPPER_rpt1_like 42 117 - -
Cone6ag0574 480 FunFam KH domain-containing protein 42 220 - -
Cone6ag0574 480 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 24 431 - GO:0003729(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0010468(PANTHER)
Cone6ag0574 480 SMART kh_6 264 336 IPR004087 GO:0003676(InterPro)
Cone6ag0574 480 SMART kh_6 140 215 IPR004087 GO:0003676(InterPro)
Cone6ag0574 480 SMART kh_6 349 424 IPR004087 GO:0003676(InterPro)
Cone6ag0574 480 SMART kh_6 41 114 IPR004087 GO:0003676(InterPro)
Cone6ag0574 480 MobiDBLite consensus disorder prediction 1 39 - -
Cone6ag0574 480 ProSiteProfiles Type-1 KH domain profile. 265 334 - -
Cone6ag0574 480 CDD KH-I_PEPPER_rpt2_like 143 215 - -
Cone6ag0574 480 CDD KH-I_PEPPER_rpt1_like 265 332 - -
Cone6ag0574 480 ProSiteProfiles Type-1 KH domain profile. 42 109 - -
Cone6ag0574 480 Gene3D - 265 428 - -
Cone6ag0574 480 Gene3D K Homology domain, type 1 139 219 IPR036612 GO:0003723(InterPro)
Cone6ag0574 480 ProSiteProfiles Type-1 KH domain profile. 141 210 - -
Cone6ag0574 480 Gene3D K Homology domain, type 1 41 124 IPR036612 GO:0003723(InterPro)
Cone6ag0574 480 ProSiteProfiles Type-1 KH domain profile. 350 419 - -
Cone6ag0574 480 CDD KH-I_PEPPER_rpt2_like 352 424 - -
Cone6ag0574 480 MobiDBLite consensus disorder prediction 463 480 - -
Cone6ag0574 480 MobiDBLite consensus disorder prediction 8 39 - -
Cone6ag0574 480 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 40 97 IPR036612 GO:0003723(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag0574 K21444 - - vvi:100265365 618.616
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone5ag0551 Cone-Chr5:2336440 Cone6ag0574 Cone-Chr6:2803769 4.97E-14 dispersed
Cone6ag0574 Cone-Chr6:2803769 Cone7ag0879 Cone-Chr7:6840483 1.40E-62 dispersed
Cone16ag0842 Cone-Chr16:9030167 Cone6ag0574 Cone-Chr6:2803769 7.37E-181 wgd
Cone2ag0199 Cone-Chr2:1047414 Cone6ag0574 Cone-Chr6:2803769 1.59E-170 wgd
Cone6ag0574 Cone-Chr6:2803769 Cone9ag0580 Cone-Chr9:2728904 7.99e-311 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g929 . . . . . . . Bma15g00293 . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0574 Cone9ag0580 . . . . . . . . . . . . . Cmo04g02901 . . . . Car15g00261 Cpe13g00957 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0023698 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 1 3