Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag0576 ATGGCTCTGCTTGCTCTGCTATTGGTGGCTTTTCTAGCAATGGTTTCTTCTGCTCATGGGTACGGCGGAGGAGGGTGGGTTAACGCTCACGCCACCTTCTACGGCGGTAGTGATGCCTCTGGCACAATGGGTGGAGCTTGTGGATATGGAAATCTATACAGCCAAGGCTACGGCACAAACACAGCTGCTCTAAGTACTGCTCTGTTCAACAGTGGCTTAAGCTGTGGGTCCTGCTATGAAATCAAGTGCGTAAATGACCGCAAATGGTGCCTCCCCGGTTCCATTGTCGTTACAGCTACCAACTTCTGTCCGCCCAACAACGCCTTGCCCAACAACGCCGGCGGTTGGTGCAACCCGCCTCAGCATCATTTTGACCTCTCACAACCCGTTTACCAGCACATTGCTCAGTACAGAGCCGGTATCGTCCCTGTTACCTACAGAAGGGTGCCTTGTAACAGAAAGGGAGGTATAAGGTTCACAATCAACGGTCATTCTTACTTCAACTTGGTGTTGATCACTAATGTTGGTGGAGCAGGTGACGTGCACAGTGTTGCCGTTAAAGGGTCGAGAACTGGATGGCAAGCAATGTCCAGAAACTGGGGTCAGAATTGGCAAAGCAACAGCTATCTCAACGGACAAAGTTTGTCGTTTAAGGTCACTACTAGCGACGGCAGGACTGTGGTCTCCTACAACGCGGCTCCTGCTGGGTGGTCCTTCGGGCAAACTTTTAGTGGTGCCCAATTCCATTAG 750 51.47 MALLALLLVAFLAMVSSAHGYGGGGWVNAHATFYGGSDASGTMGGACGYGNLYSQGYGTNTAALSTALFNSGLSCGSCYEIKCVNDRKWCLPGSIVVTATNFCPPNNALPNNAGGWCNPPQHHFDLSQPVYQHIAQYRAGIVPVTYRRVPCNRKGGIRFTINGHSYFNLVLITNVGGAGDVHSVAVKGSRTGWQAMSRNWGQNWQSNSYLNGQSLSFKVTTSDGRTVVSYNAAPAGWSFGQTFSGAQFH 249
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2820883 2822524 + Conep06aG0058900.1 Cone6ag0576 439460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag0576 249 Pfam Expansin C-terminal domain 157 234 IPR007117 -
Cone6ag0576 249 Gene3D - 12 152 IPR036908 -
Cone6ag0576 249 CDD DPBB_EXPA_N 25 151 - -
Cone6ag0576 249 FunFam Expansin 15 152 - -
Cone6ag0576 249 PRINTS Expansin/Lol pI family signature 65 83 IPR007118 GO:0005576(InterPro)
Cone6ag0576 249 PRINTS Expansin/Lol pI family signature 231 245 IPR007118 GO:0005576(InterPro)
Cone6ag0576 249 PRINTS Expansin/Lol pI family signature 25 40 IPR007118 GO:0005576(InterPro)
Cone6ag0576 249 PRINTS Expansin/Lol pI family signature 193 207 IPR007118 GO:0005576(InterPro)
Cone6ag0576 249 PRINTS Expansin/Lol pI family signature 139 155 IPR007118 GO:0005576(InterPro)
Cone6ag0576 249 PRINTS Expansin/Lol pI family signature 43 61 IPR007118 GO:0005576(InterPro)
Cone6ag0576 249 Gene3D - 153 249 IPR036749 -
Cone6ag0576 249 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 44 156 IPR007112 -
Cone6ag0576 249 Pfam Lytic transglycolase 61 146 IPR009009 -
Cone6ag0576 249 SUPERFAMILY PHL pollen allergen 153 244 IPR036749 -
Cone6ag0576 249 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 166 245 IPR007117 -
Cone6ag0576 249 PANTHER EXPANSIN-A15 6 248 IPR002963 GO:0009664(InterPro)
Cone6ag0576 249 SMART dpbb_1 61 146 IPR007112 -
Cone6ag0576 249 PRINTS Expansin signature 114 131 IPR002963 GO:0009664(InterPro)
Cone6ag0576 249 PRINTS Expansin signature 155 167 IPR002963 GO:0009664(InterPro)
Cone6ag0576 249 PRINTS Expansin signature 95 105 IPR002963 GO:0009664(InterPro)
Cone6ag0576 249 PRINTS Expansin signature 83 94 IPR002963 GO:0009664(InterPro)
Cone6ag0576 249 PRINTS Expansin signature 231 247 IPR002963 GO:0009664(InterPro)
Cone6ag0576 249 PRINTS Expansin signature 56 70 IPR002963 GO:0009664(InterPro)
Cone6ag0576 249 PRINTS Expansin signature 167 188 IPR002963 GO:0009664(InterPro)
Cone6ag0576 249 PRINTS Expansin signature 131 144 IPR002963 GO:0009664(InterPro)
Cone6ag0576 249 PRINTS Expansin signature 202 223 IPR002963 GO:0009664(InterPro)
Cone6ag0576 249 SUPERFAMILY Barwin-like endoglucanases 7 174 IPR036908 -
Cone6ag0576 249 FunFam Expansin 156 248 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone1ag1621 Cone-Chr1:57641927 Cone6ag0576 Cone-Chr6:2820883 3.53E-139 dispersed
Cone5ag0142 Cone-Chr5:611803 Cone6ag0576 Cone-Chr6:2820883 3.05E-142 dispersed
Cone5ag1140 Cone-Chr5:5119294 Cone6ag0576 Cone-Chr6:2820883 4.80E-129 dispersed
Cone6ag0576 Cone-Chr6:2820883 Cone7ag1075 Cone-Chr7:8181630 6.45E-127 dispersed
Cone13ag0949 Cone-Chr13:8148708 Cone6ag0576 Cone-Chr6:2820883 2.76E-161 wgd
Cone13ag0065 Cone-Chr13:406449 Cone6ag0576 Cone-Chr6:2820883 9.10E-155 wgd
Cone19ag0939 Cone-Chr19:7191805 Cone6ag0576 Cone-Chr6:2820883 1.17E-162 wgd
Cone19ag0067 Cone-Chr19:419124 Cone6ag0576 Cone-Chr6:2820883 1.51E-155 wgd
Cone2ag0518 Cone-Chr2:2874278 Cone6ag0576 Cone-Chr6:2820883 5.75E-31 wgd
Cone4ag0531 Cone-Chr4:2389577 Cone6ag0576 Cone-Chr6:2820883 1.47E-147 wgd
Cone6ag0576 Cone-Chr6:2820883 Cone7ag0505 Cone-Chr7:2331133 2.54E-141 wgd
Cone6ag0576 Cone-Chr6:2820883 Cone9ag0581 Cone-Chr9:2741577 1.07E-182 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag0576 - - - 0.0