Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag0578 ATGCAGAGTCAGAAAATGAACTTGGTTTTATCAACTGATGATCCTAAGCCCAGATTGAAGTGGACTTCTGACCTTCATCAAAGATTTGTTGAAGCTGTCATTCAGCTTGGAGGAGCAGATAAGGCTACACCAAAGAGTTTGATGAGGCTAATGGGAATTCCTGGATTAAGTTTATACCACTTGAAGAGCCATTTGCAGAAATACCGGCTAGGGAAAAGCCAACAATCAGATGCTAGTTCTGATGATAAGCAGCCGGAAGAGACTCAGAGCAGTGATGAGGATTTCATTCAGAGCCATGATAATGAAAGCTTGGAGATTGCTCAGGCCCTGAAAATGCAACTAGAAGTGCAGAAAAAACTGCATGAACAGATTGAGGTGCAGAGACATCTACAGCTTAGAATAGAAGCTCAGGGAAAATATTTACAGTCAGTACTAAAGAAAGCACAAGAAACACTTTCCGAATACCGTTCTTCTCCTTCCTCTTCTTCAGGTTTGGACACTGCAAAATCCGAGCTCTCTCATTTGGCATCCATGGTGAGTACAAACTGCCCGAGTTCTTCAATCTCGGAATTAACTGAACTAGAAGGGCTGAGCTCTATTGATATCGATAAAAAGAAAATAAAATGTGGGACGATATGTTCCGTTGAAAGTTCCTTAACGTCCTTGGAGAGTTCCAGAAGTAAGGAAGAAGAGAAGGAAAGGGCTTCCGTTGAGCTTCCATTGATGGAGATCAATCCGGTAAGGAATGGTGGAAGGAAGAGAAGTGGAAGCACGATTTCGGACGGTAATTGTTCCGAGGAACGTGATAACAAATTGTGCAAGTTCAGGTTGTCTGAATTGATCGACTTGAACAAGGCAATATGA 864 42.25 MQSQKMNLVLSTDDPKPRLKWTSDLHQRFVEAVIQLGGADKATPKSLMRLMGIPGLSLYHLKSHLQKYRLGKSQQSDASSDDKQPEETQSSDEDFIQSHDNESLEIAQALKMQLEVQKKLHEQIEVQRHLQLRIEAQGKYLQSVLKKAQETLSEYRSSPSSSSGLDTAKSELSHLASMVSTNCPSSSISELTELEGLSSIDIDKKKIKCGTICSVESSLTSLESSRSKEEEKERASVELPLMEINPVRNGGRKRSGSTISDGNCSEERDNKLCKFRLSELIDLNKAI 287
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2827842 2829407 - Conep06aG0059100.1 Cone6ag0578 439462

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag0578 287 Pfam Myb-like DNA-binding domain 18 69 IPR001005 -
Cone6ag0578 287 FunFam Myb family transcription factor 15 73 - -
Cone6ag0578 287 SUPERFAMILY Homeodomain-like 16 71 IPR009057 -
Cone6ag0578 287 MobiDBLite consensus disorder prediction 79 94 - -
Cone6ag0578 287 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 3 237 IPR046955 GO:0003700(InterPro)
Cone6ag0578 287 MobiDBLite consensus disorder prediction 69 94 - -
Cone6ag0578 287 Pfam MYB-CC type transfactor, LHEQLE motif 105 151 IPR025756 -
Cone6ag0578 287 MobiDBLite consensus disorder prediction 245 266 - -
Cone6ag0578 287 Coils Coil 107 127 - -
Cone6ag0578 287 NCBIfam myb-like DNA-binding domain, SHAQKYF class 16 71 IPR006447 GO:0003677(InterPro)
Cone6ag0578 287 Gene3D - 15 73 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag0578 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone3ag0582 Cone-Chr3:2867259 Cone6ag0578 Cone-Chr6:2827842 1.41E-43 dispersed
Cone6ag0578 Cone-Chr6:2827842 Cone7ag0390 Cone-Chr7:1718930 2.85E-33 dispersed
Cone19ag0942 Cone-Chr19:7219573 Cone6ag0578 Cone-Chr6:2827842 1.72E-64 wgd
Cone6ag0578 Cone-Chr6:2827842 Cone9ag0583 Cone-Chr9:2748275 1.65E-139 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g923 . . . Bda11g01213 . . Bma14g01649 . . . . . . . . . . . . . . . . . . . . . . . . . Cone19ag0942 Cone6ag0578 Cone9ag0583 . . . . . Blo11g00775 Bda07g01469 Bda11g01213 Bpe11g01644 . . Bma06g00696 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone4ag0401 . 1 288 G2-like Transcription Factor Family AT3G24120 62.5 3.7e-82 302.4
Cone7ag0390 . 1 288 G2-like Transcription Factor Family AT3G24120 61.5 1.2e-80 297.4
Cone8ag1607 . 25 175 G2-like Transcription Factor Family AT3G24120 62.0 1.2e-40 164.5
Cone3ag1514 . 32 173 G2-like Transcription Factor Family AT3G24120 62.0 4.6e-40 162.5
Cone10ag1448 . 32 173 G2-like Transcription Factor Family AT3G24120 61.4 1.0e-39 161.4
Cone18ag1238 . 270 476 G2-like Transcription Factor Family AT5G16560 57.8 1.4e-47 188.0
Cone12ag0486 . 157 360 G2-like Transcription Factor Family AT5G16560 50.7 2.9e-37 153.7
Cone7ag1407 . 4 183 G2-like Transcription Factor Family AT5G42630 57.0 6.7e-44 174.9
Cone4ag1544 . 2 177 G2-like Transcription Factor Family AT5G42630 58.8 3.4e-40 162.5
Cone20ag0163 . 112 263 G2-like Transcription Factor Family AT5G42630 60.5 7.9e-37 151.4
Cone1ag0620 . 1 325 G2-like Transcription Factor Family AT5G59570 50.3 8.6e-63 238.0
Cone19ag0853 . 1 273 G2-like Transcription Factor Family AT1G25550 58.2 6.1e-63 238.4
Cone13ag0852 . 20 275 G2-like Transcription Factor Family AT1G25550 57.7 2.3e-62 236.5
Cone9ag0476 . 12 255 G2-like Transcription Factor Family AT1G25550 56.9 4.1e-59 225.7
Cone6ag0464 . 12 255 G2-like Transcription Factor Family AT1G25550 56.6 7.0e-59 224.9
Cone13ag0852 . 20 315 G2-like Transcription Factor Family AT1G68670 51.3 1.8e-67 253.8
Cone19ag0853 . 19 306 G2-like Transcription Factor Family AT1G68670 53.3 5.2e-67 252.3
Cone6ag0464 . 12 292 G2-like Transcription Factor Family AT1G68670 52.1 3.5e-63 239.6
Cone5ag1126 . 1 263 G2-like Transcription Factor Family AT3G46640 54.6 1.0e-64 244.6
Cone1ag0620 . 1 285 G2-like Transcription Factor Family AT3G46640 52.1 1.4e-63 240.7
Cone10ag0471 . 1 333 G2-like Transcription Factor Family AT5G05090 51.9 4.8e-73 271.9
Cone3ag0500 . 1 332 G2-like Transcription Factor Family AT5G05090 51.5 3.4e-71 265.8
Cone4ag0401 . 1 291 G2-like Transcription Factor Family AT4G13640 58.7 2.5e-62 236.5
Cone7ag0390 . 1 291 G2-like Transcription Factor Family AT4G13640 58.5 1.4e-60 230.7
Cone10ag0633 . 88 350 G2-like Transcription Factor Family AT3G04450 54.4 6.8e-55 212.2
Cone17ag0682 . 83 296 G2-like Transcription Factor Family AT3G04450 55.5 8.4e-45 178.7
Cone4ag0401 . 1 288 G2-like Transcription Factor Family AT3G24120 62.5 3.7e-82 302.4
Cone7ag0390 . 1 288 G2-like Transcription Factor Family AT3G24120 61.5 1.2e-80 297.4
Cone8ag1607 . 25 175 G2-like Transcription Factor Family AT3G24120 62.0 1.2e-40 164.5
Cone3ag1514 . 32 173 G2-like Transcription Factor Family AT3G24120 62.0 4.6e-40 162.5
Cone10ag1448 . 32 173 G2-like Transcription Factor Family AT3G24120 61.4 1.0e-39 161.4
Cone6ag0578 . 5 267 G2-like Transcription Factor Family AT1G69580 53.5 3.8e-51 199.5
Cone9ag0583 . 5 257 G2-like Transcription Factor Family AT1G69580 52.0 3.6e-49 193.0
Cone10ag0559 . 54 247 G2-like Transcription Factor Family AT1G69580 55.6 4.1e-37 152.9
Cone8ag1607 . 1 301 G2-like Transcription Factor Family AT1G79430 57.0 5.1e-70 262.3
Cone3ag1514 . 1 322 G2-like Transcription Factor Family AT1G79430 51.6 2.8e-68 256.5
Cone10ag1448 . 1 326 G2-like Transcription Factor Family AT1G79430 51.5 3.1e-67 253.1
Cone4ag0401 . 34 197 G2-like Transcription Factor Family AT1G79430 62.2 1.5e-40 164.5
Cone7ag0390 . 19 225 G2-like Transcription Factor Family AT1G79430 52.6 2.1e-39 160.6
Cone1ag0088 . 80 297 G2-like Transcription Factor Family AT2G01060 70.2 2.1e-59 226.5
Cone5ag1779 . 80 301 G2-like Transcription Factor Family AT2G01060 68.9 7.8e-59 224.6
Cone10ag0471 . 1 333 G2-like Transcription Factor Family AT3G10760 60.9 5.3e-93 338.6
Cone3ag0500 . 1 332 G2-like Transcription Factor Family AT3G10760 59.4 9.9e-92 334.3
Cone10ag0471 . 1 220 G2-like Transcription Factor Family AT2G40970 59.9 3.0e-61 232.6
Cone3ag0500 . 1 218 G2-like Transcription Factor Family AT2G40970 60.0 1.5e-60 230.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004564 2 2 1 2 1 1 2 0 2 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 2 1 2 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46301 PF03398 Ist1 4.00E-64 No_clan Cone TF