Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag0578 ATGCAGAGTCAGAAAATGAACTTGGTTTTATCAACTGATGATCCTAAGCCCAGATTGAAGTGGACTTCTGACCTTCATCAAAGATTTGTTGAAGCTGTCATTCAGCTTGGAGGAGCAGATAAGGCTACACCAAAGAGTTTGATGAGGCTAATGGGAATTCCTGGATTAAGTTTATACCACTTGAAGAGCCATTTGCAGAAATACCGGCTAGGGAAAAGCCAACAATCAGATGCTAGTTCTGATGATAAGCAGCCGGAAGAGACTCAGAGCAGTGATGAGGATTTCATTCAGAGCCATGATAATGAAAGCTTGGAGATTGCTCAGGCCCTGAAAATGCAACTAGAAGTGCAGAAAAAACTGCATGAACAGATTGAGGTGCAGAGACATCTACAGCTTAGAATAGAAGCTCAGGGAAAATATTTACAGTCAGTACTAAAGAAAGCACAAGAAACACTTTCCGAATACCGTTCTTCTCCTTCCTCTTCTTCAGGTTTGGACACTGCAAAATCCGAGCTCTCTCATTTGGCATCCATGGTGAGTACAAACTGCCCGAGTTCTTCAATCTCGGAATTAACTGAACTAGAAGGGCTGAGCTCTATTGATATCGATAAAAAGAAAATAAAATGTGGGACGATATGTTCCGTTGAAAGTTCCTTAACGTCCTTGGAGAGTTCCAGAAGTAAGGAAGAAGAGAAGGAAAGGGCTTCCGTTGAGCTTCCATTGATGGAGATCAATCCGGTAAGGAATGGTGGAAGGAAGAGAAGTGGAAGCACGATTTCGGACGGTAATTGTTCCGAGGAACGTGATAACAAATTGTGCAAGTTCAGGTTGTCTGAATTGATCGACTTGAACAAGGCAATATGA 864 42.25 MQSQKMNLVLSTDDPKPRLKWTSDLHQRFVEAVIQLGGADKATPKSLMRLMGIPGLSLYHLKSHLQKYRLGKSQQSDASSDDKQPEETQSSDEDFIQSHDNESLEIAQALKMQLEVQKKLHEQIEVQRHLQLRIEAQGKYLQSVLKKAQETLSEYRSSPSSSSGLDTAKSELSHLASMVSTNCPSSSISELTELEGLSSIDIDKKKIKCGTICSVESSLTSLESSRSKEEEKERASVELPLMEINPVRNGGRKRSGSTISDGNCSEERDNKLCKFRLSELIDLNKAI 287
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2827842 2829407 - Conep06aG0059100.1 Cone6ag0578 439462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag0578 287 Pfam Myb-like DNA-binding domain 18 69 IPR001005 -
Cone6ag0578 287 FunFam Myb family transcription factor 15 73 - -
Cone6ag0578 287 SUPERFAMILY Homeodomain-like 16 71 IPR009057 -
Cone6ag0578 287 MobiDBLite consensus disorder prediction 79 94 - -
Cone6ag0578 287 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 3 237 IPR046955 GO:0003700(InterPro)
Cone6ag0578 287 MobiDBLite consensus disorder prediction 69 94 - -
Cone6ag0578 287 Pfam MYB-CC type transfactor, LHEQLE motif 105 151 IPR025756 -
Cone6ag0578 287 MobiDBLite consensus disorder prediction 245 266 - -
Cone6ag0578 287 Coils Coil 107 127 - -
Cone6ag0578 287 NCBIfam myb-like DNA-binding domain, SHAQKYF class 16 71 IPR006447 GO:0003677(InterPro)
Cone6ag0578 287 Gene3D - 15 73 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone3ag0582 Cone-Chr3:2867259 Cone6ag0578 Cone-Chr6:2827842 1.41E-43 dispersed
Cone6ag0578 Cone-Chr6:2827842 Cone7ag0390 Cone-Chr7:1718930 2.85E-33 dispersed
Cone19ag0942 Cone-Chr19:7219573 Cone6ag0578 Cone-Chr6:2827842 1.72E-64 wgd
Cone6ag0578 Cone-Chr6:2827842 Cone9ag0583 Cone-Chr9:2748275 1.65E-139 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46301 PF03398 Ist1 4.00E-64 No_clan Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag0578 - - - 0.0