Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone6ag0578 | ATGCAGAGTCAGAAAATGAACTTGGTTTTATCAACTGATGATCCTAAGCCCAGATTGAAGTGGACTTCTGACCTTCATCAAAGATTTGTTGAAGCTGTCATTCAGCTTGGAGGAGCAGATAAGGCTACACCAAAGAGTTTGATGAGGCTAATGGGAATTCCTGGATTAAGTTTATACCACTTGAAGAGCCATTTGCAGAAATACCGGCTAGGGAAAAGCCAACAATCAGATGCTAGTTCTGATGATAAGCAGCCGGAAGAGACTCAGAGCAGTGATGAGGATTTCATTCAGAGCCATGATAATGAAAGCTTGGAGATTGCTCAGGCCCTGAAAATGCAACTAGAAGTGCAGAAAAAACTGCATGAACAGATTGAGGTGCAGAGACATCTACAGCTTAGAATAGAAGCTCAGGGAAAATATTTACAGTCAGTACTAAAGAAAGCACAAGAAACACTTTCCGAATACCGTTCTTCTCCTTCCTCTTCTTCAGGTTTGGACACTGCAAAATCCGAGCTCTCTCATTTGGCATCCATGGTGAGTACAAACTGCCCGAGTTCTTCAATCTCGGAATTAACTGAACTAGAAGGGCTGAGCTCTATTGATATCGATAAAAAGAAAATAAAATGTGGGACGATATGTTCCGTTGAAAGTTCCTTAACGTCCTTGGAGAGTTCCAGAAGTAAGGAAGAAGAGAAGGAAAGGGCTTCCGTTGAGCTTCCATTGATGGAGATCAATCCGGTAAGGAATGGTGGAAGGAAGAGAAGTGGAAGCACGATTTCGGACGGTAATTGTTCCGAGGAACGTGATAACAAATTGTGCAAGTTCAGGTTGTCTGAATTGATCGACTTGAACAAGGCAATATGA | 864 | 42.25 | MQSQKMNLVLSTDDPKPRLKWTSDLHQRFVEAVIQLGGADKATPKSLMRLMGIPGLSLYHLKSHLQKYRLGKSQQSDASSDDKQPEETQSSDEDFIQSHDNESLEIAQALKMQLEVQKKLHEQIEVQRHLQLRIEAQGKYLQSVLKKAQETLSEYRSSPSSSSGLDTAKSELSHLASMVSTNCPSSSISELTELEGLSSIDIDKKKIKCGTICSVESSLTSLESSRSKEEEKERASVELPLMEINPVRNGGRKRSGSTISDGNCSEERDNKLCKFRLSELIDLNKAI | 287 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 2827842 | 2829407 | - | Conep06aG0059100.1 | Cone6ag0578 | 439462 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone6ag0578 | 287 | Pfam | Myb-like DNA-binding domain | 18 | 69 | IPR001005 | - | |
Cone6ag0578 | 287 | FunFam | Myb family transcription factor | 15 | 73 | - | - | |
Cone6ag0578 | 287 | SUPERFAMILY | Homeodomain-like | 16 | 71 | IPR009057 | - | |
Cone6ag0578 | 287 | MobiDBLite | consensus disorder prediction | 79 | 94 | - | - | |
Cone6ag0578 | 287 | PANTHER | MYB FAMILY TRANSCRIPTION FACTOR PHL11 | 3 | 237 | IPR046955 | GO:0003700(InterPro) | |
Cone6ag0578 | 287 | MobiDBLite | consensus disorder prediction | 69 | 94 | - | - | |
Cone6ag0578 | 287 | Pfam | MYB-CC type transfactor, LHEQLE motif | 105 | 151 | IPR025756 | - | |
Cone6ag0578 | 287 | MobiDBLite | consensus disorder prediction | 245 | 266 | - | - | |
Cone6ag0578 | 287 | Coils | Coil | 107 | 127 | - | - | |
Cone6ag0578 | 287 | NCBIfam | myb-like DNA-binding domain, SHAQKYF class | 16 | 71 | IPR006447 | GO:0003677(InterPro) | |
Cone6ag0578 | 287 | Gene3D | - | 15 | 73 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone3ag0582 | Cone-Chr3:2867259 | Cone6ag0578 | Cone-Chr6:2827842 | 1.41E-43 | dispersed | |
Cone6ag0578 | Cone-Chr6:2827842 | Cone7ag0390 | Cone-Chr7:1718930 | 2.85E-33 | dispersed | |
Cone19ag0942 | Cone-Chr19:7219573 | Cone6ag0578 | Cone-Chr6:2827842 | 1.72E-64 | wgd | |
Cone6ag0578 | Cone-Chr6:2827842 | Cone9ag0583 | Cone-Chr9:2748275 | 1.65E-139 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
46301 | PF03398 | Ist1 | 4.00E-64 | No_clan | Cone | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone6ag0578 | - | - | - | 0.0 |