Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag0582 ATGGAGAGCCAACACCATCATGACCAACCAGCAGCTAAAGGTGCTTCCTTCCTCACTACTTGCATCAATGGTGTCAATGCCTTATCAGGTGTAGGGATATTATCAATCCCGTATGCACTTGCTCAAGGAGGGTGGCTAAGCTTAATGCTCCTTTTGTTGGTAGCAATTCTTTGCTTCTACACAGGGATACTTCTGCAAAGATGTATGGACACAAACCCTCTAATCATCAAAACCTACCCGGATATAGGAGAGCTAGCTTTCGGGTACAAAGGAAGAGCATTAATATCCATTTTCATGTACCTTGAGCTATACTTGGTTGCTGTTGAGTTTCTAATCCTAGAAGGTGACCATTTAGAGAAGCTTTTTCCAAACACGGGTTTCAAAATAGCACATGTAAGAGTCGGAAGCAAACAGGCATTTGTTGTTCTAGCTTCACTAGTTGTCCTGCCAACAACATGGTTGAGGAACATGAGTGTTCTGGCATATGTTTCAGCTACCGGGGTACTGGCATCGGTTACTTTGGTCTGTTGTGTTTTCTGGGTTGGAGCAATTGATGGTGTGGGATTCCATGGAAGAGAATATCATGATGGGAACATGCTTTTGAGTATGAGAGGGTTGCCTATTGCTCTTAGCTTGTTTGCCTTTTGTTATAGCTGTCATCCTGTTTTTCCCATGTTACGCAATTCCATGAGAGACAAGACTCAACTTCCTAAGGTTCTACTGGTGTGCTTCGTTGTAAGCACAGTCAATTATGGATCAATGGGAATTCTTGGCTACTTGATGTATGGAGGAAATTTGAAGTCGCAAGTGACACTAAACCTTCCGATTTCGAAAGCTAGCTCGAGAATAGCAATATACACTACACTAATCAATCCTCTATCAAAGTATGCAATCATGATAAACCCAATTGCTACAGCCATTGAGGAGACATCTTATTTCCAAAAAAGCAAACCCTTTAGCATCTTAATCAGAAGTGTGCTTGTGATGAGCACAGTGATTGTGGCTCTGAGCATCCCATTTTTTGGGTACATCATGGCGTTTATAGGTGCGTTTTTAAGCATCATGGTGGCCATGTTTATTCCTTGTCTTTGCTACCTTAAGATCAACAAAGCTGCAAGGAGATTTGGAATGGAGTTGGTAGTGATTGTAGGGATCTTGGTATTGGGTTCTTTTGTTGCCATAACGGGTACCTTTATTTCCGTAAAGCAAATTGTAAATCATCTATGA 1227 41.65 MESQHHHDQPAAKGASFLTTCINGVNALSGVGILSIPYALAQGGWLSLMLLLLVAILCFYTGILLQRCMDTNPLIIKTYPDIGELAFGYKGRALISIFMYLELYLVAVEFLILEGDHLEKLFPNTGFKIAHVRVGSKQAFVVLASLVVLPTTWLRNMSVLAYVSATGVLASVTLVCCVFWVGAIDGVGFHGREYHDGNMLLSMRGLPIALSLFAFCYSCHPVFPMLRNSMRDKTQLPKVLLVCFVVSTVNYGSMGILGYLMYGGNLKSQVTLNLPISKASSRIAIYTTLINPLSKYAIMINPIATAIEETSYFQKSKPFSILIRSVLVMSTVIVALSIPFFGYIMAFIGAFLSIMVAMFIPCLCYLKINKAARRFGMELVVIVGILVLGSFVAITGTFISVKQIVNHL 408
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2856884 2858384 - Conep06aG0059500.1 Cone6ag0582 439466

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag0582 408 Pfam Transmembrane amino acid transporter protein 14 396 IPR013057 -
Cone6ag0582 408 PANTHER OS05G0424000 PROTEIN-RELATED 11 397 - GO:0003333(PANTHER)|GO:0015171(PANTHER)|GO:0016020(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag0582 K15015 - - cit:102615922 549.666
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag1049 Cone-Chr11:8270222 Cone6ag0582 Cone-Chr6:2856884 1.48E-109 dispersed
Cone13ag0062 Cone-Chr13:371872 Cone6ag0582 Cone-Chr6:2856884 3.13E-95 dispersed
Cone1ag1364 Cone-Chr1:56602831 Cone6ag0582 Cone-Chr6:2856884 4.68E-103 dispersed
Cone3ag0018 Cone-Chr3:117532 Cone6ag0582 Cone-Chr6:2856884 2.47E-33 dispersed
Cone3ag0596 Cone-Chr3:2949402 Cone6ag0582 Cone-Chr6:2856884 5.76E-70 dispersed
Cone4ag0539 Cone-Chr4:2423026 Cone6ag0582 Cone-Chr6:2856884 7.60E-141 wgd
Cone6ag0582 Cone-Chr6:2856884 Cone7ag0513 Cone-Chr7:2362390 3.49E-118 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g918 Blo01g00429 . Bda01g02153 . . . . . Cmo04g01736 . . . . . . . Cpe01g01465 . . . . . . . . . . . . . . . . Cone6ag0582 . Lsi04g00425 Csa05g02453 Chy10g01003 Cme10g00414 . . . . . Bpe02g02340 Bma01g00101 . . . . Cma04g01658 . Car04g01698 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000580 6 2 3 3 5 2 3 2 2 5 2 2 3 4 3 3 2 4 3 2 3 4 5 3 4 3 6 3 5 7 104