Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag0590 ATGGCTCCAAAATCGAACTCAGCCGATGGTAGGACAAGGAGCTCTGTTCAGATTTTTATTGTTGTGGGTTTGTGTTGCTTTTTCTATATCCTAGGGGCATGGCAGAGAAGTGGTTTTGGTAAGGGAGATAGTATAGCCATGGAAATTACTAAGAATGGAGCAGATTGCAATATAGCTCAAAAATTAAATTTCGAGACACATCATGGTGGTCAGGTTCAGAGTATTGACGAATCTGAACCGACTTCTAAAGTGATCGAACCTTGCAGTCATCATTATATTGATTACACTCCCTGTCAGGATCAGAAACGTGCAATGACCTTCCCTAGGGACAATATGATTTATCGAGAGAGGCATTGCCCACCTGAGGAGGACAAGTTGCACTGCCTCATTCCAGCACCCAAGGGATATGTAACTCCCTTCCCTTGGCCAAAGAGTCGTGACTATGTACCCTATGCAAATGCACCATATAAGAGTTTGACTGTTGAGAAGGCTATCCAGAACTGGATTCAGTACGAGGGCAATGTATTCAGGTTCCCAGGTGGGGGTACACAGTTTCCCCAAGGGGCAAATAAATATATTGATCAGCTTGCTTCTGTGATTCCTATTGAAAATGGCATGGTCAGAACTGCCCTGGACACTGGCTGCGGGGTTGCTAGTTGGGGTGCTTACCTTTTAAGTAGAAATGTCATTGCCATGTCGTTTGCTCCAAGAGATTCACATGAAGCCCAGGTTCAGTTTGCTTTGGAAAGAGGAGTGCCTGCTGTTATTGGCGTTCTGGGTACCATTAAGTTGCCTTATCCATCTGGAGCCTTTGACATGGCTCACTGCTCTCGCTGCTTAATTCCTTGGGGAGCAAATGATGGAATGTACATGATGGAAGTTGACCGAGTCCTTAGACCTGGTGGGTATTGGGTCCTTTCGGGTCCTCCAATCAACTGGAAGACTAATTACAAGGCATGGCAACGACCCAGAAATGACCTTGAAGAAGAACAAAGAAAGATCGAGGAGGTTGCTGAACTTCTTTGCTGGGAGAAGAAGTCTGAGAAGGGTGAAATTGCTATTTGGCAAAAGCGAGTGAATGCTGGCTCTTGCCAAGGCAGACAAGATGATTCCCGAACCCCCATATGCAAATCTACAGATGTTGATAATGTCTGGTACTCAAAAATGGAAGCATGTGTAACTCCTCCTAACATCAATACTCAGGATGGAGTTGCCGCTGAACTAAAGCCATTTCCAGAGAGGCTTTATGCTGTCCCTCCTAGAATTTCCAGTGGGTCGATTCCTGGGGTTTCTGCTGAGACATATCAGGAGGACAACAACCAATGGAAGAAGCATGTAAATGCTTATAGGAAAATCAACAAGCTCATTGACACTGGAAGATATCGCAACATTATGGATATGAATGCTGGTTTGGGAGGCTTTGCTGCAGCTCTGGAGTCTCCTAAATCGTGGGTCATGAATGTGGTCCCCACTATTGCTGAGAAAAATACTCTGGGTGTCATATATGAGCGAGGATTGATCGGCATCTATCATGACTGGTGTGAAGCTTTCTCCACATACCCAAGGACATATGATCTGATTCACGCCAATGGTGTTTTCAGTCTGTACAAGGACAAGTGCAAATTCGAGGACATTCTTCTGGAAATGGACAGGATTTTGAGACCTGAAGGAGCAATCATATTCCGAGATGAAGTAGATACCTTAATTAAGGTAAGGAAGATAGTTGGAGGGATGAGATGGGATACAAAAATGGCGGACCATGAAGACGGACCCCTTGTTCCGGAAAAGATATTGGTCGCCGTGAAGCAGTACTGGGTTGCTGATGGAAACGCAACATCAGCTCGATGA 1848 45.13 MAPKSNSADGRTRSSVQIFIVVGLCCFFYILGAWQRSGFGKGDSIAMEITKNGADCNIAQKLNFETHHGGQVQSIDESEPTSKVIEPCSHHYIDYTPCQDQKRAMTFPRDNMIYRERHCPPEEDKLHCLIPAPKGYVTPFPWPKSRDYVPYANAPYKSLTVEKAIQNWIQYEGNVFRFPGGGTQFPQGANKYIDQLASVIPIENGMVRTALDTGCGVASWGAYLLSRNVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKLPYPSGAFDMAHCSRCLIPWGANDGMYMMEVDRVLRPGGYWVLSGPPINWKTNYKAWQRPRNDLEEEQRKIEEVAELLCWEKKSEKGEIAIWQKRVNAGSCQGRQDDSRTPICKSTDVDNVWYSKMEACVTPPNINTQDGVAAELKPFPERLYAVPPRISSGSIPGVSAETYQEDNNQWKKHVNAYRKINKLIDTGRYRNIMDMNAGLGGFAAALESPKSWVMNVVPTIAEKNTLGVIYERGLIGIYHDWCEAFSTYPRTYDLIHANGVFSLYKDKCKFEDILLEMDRILRPEGAIIFRDEVDTLIKVRKIVGGMRWDTKMADHEDGPLVPEKILVAVKQYWVADGNATSAR 615
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2897058 2901045 + Conep06aG0060300.1 Cone6ag0590 439474

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag0590 615 Pfam Putative S-adenosyl-L-methionine-dependent methyltransferase 94 602 IPR004159 GO:0008168(InterPro)
Cone6ag0590 615 Gene3D Vaccinia Virus protein VP39 162 358 IPR029063 -
Cone6ag0590 615 PANTHER SAM-DEPENDENT METHYLTRANSFERASE 13 605 IPR004159 GO:0005737(PANTHER)|GO:0005768(PANTHER)|GO:0005802(PANTHER)|GO:0008168(InterPro)
Cone6ag0590 615 FunFam probable methyltransferase PMT2 162 360 - -
Cone6ag0590 615 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 445 564 IPR029063 -
Cone6ag0590 615 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 116 325 IPR029063 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag0590 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone6ag0590 Cone-Chr6:2897058 Cone8ag0621 Cone-Chr8:6124769 0 dispersed
Cone16ag0161 Cone-Chr16:993259 Cone6ag0590 Cone-Chr6:2897058 0 wgd
Cone6ag0590 Cone-Chr6:2897058 Cone9ag0593 Cone-Chr9:2800257 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g905 . . . . . Bpe10g00868 Bma14g01641 Bma15g00160 . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0590 Cone9ag0593 . . . . Blo06g00905 Blo11g00770 . . Bpe11g01640 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004647 1 1 2 3 3 1 2 1 1 1 1 1 2 1 1 2 1 3 1 1 1 1 1 1 1 1 1 2 1 2 42