Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag0603 ATGGCTGGGAATGCCGACTCTATGTCGATCAAGGTTCCGTACCGTAATCTGAAAGAGGCGGAAGTAGAAATGGTGGATGTGGACGATCTGCATCACCGACAAAATGAGCAGAATTCTAATTCACCTTCTTTTTCTAGTAGGGTTTCCAATGGAAGTCCTGACCTCTCGTCGGAAATACCTCCTATCAGATCCAAGCAAAGTAGCTTGATGACTCTGATTCTCAGCTGTACAATCGCCGCCGGTGTTCAATTTGGCTGGGCTCTACAGCTTTCCCTTCTGACTCCTTATATTCAGACACTTGGAATAGGGCATGCCTTTTCTTCATTTATTTGGCTTTGTGGTCCTATTACAGGTCTTGTGGTTCAACCATGTGTTGGAATTTGGAGTGACAAGTGCTCTTCAAAATATGGAAGAAGACGCCCATTTATTCTAGCTGGATCCCTAATGATCTCAGTTGCTGTGGTATTAATTGGGTTTTCAGCTGACATTGGGTATATATTAGGGGATACAAAAGAGGACTGCAGAAAATTTAAAGGTACTCGTACAATGGGAGCTTTTGTGTTTATTCTTGGGTTCTGGCTGTTAGATCTCGCCAACAATACAGTACAGGGACCAGCTCGTGCTCTTCTAGCTGATCTATCAGGCCCTGATCAACGCAACTCAGCAAATGCGGTCTTTTGTTCGTGGATGGCCTTCGGCAACATCCTAGGATTTTCTGCTGGAGCTAGTGGAAATTGGCACAGATGGTTTCCTTTTGTGTTGAGTAGAGCTTGCTGTGAAGCTTGTGGAAATCTTAAAGCAGCGTTCATTGTGGCAGTGGTTTTCCTGTGTTTATGTACTCTTGTGACTCTATACTTTGCTGATGAAGTGCCATTCACCGCCAATCACCCTCACCGCTTGTCAGATTCTGCTCCCTTGTTGAATGATCATTCGCAAAATGATCTGCACCATTCAAAACCAGGAACTGATGTGGAATTTATTGACAATGTCAATGGAAAGTTAATTGAAAATGGCAATGAAAGGGATGCAAATTTAAATCATGTCAAACCAAAAATCAGGGAAGTTCCAACTGAAAGTTATACCGATGGCCCTGGAGCAGTTATGGTCAAATTGCTGACCAGTTTAAGACATCTACCTCCTGCTATGCATTCAGTTCTTATTGTTATGGCTCTTAGCTGGCTATCATGGTTTCCCTTCTTTCTTTTTGATACCGATTGGATGGGAAGAGAAGTTTATCATGGTGACCCAACAGGCAATGCAGCTAATGTACAATCTTATGATCAGGGTGTCAGAGAAGGTGCATTTGGTTTGCTATTGAATTCTGTTGTCCTCGCCATCAGTTCTTTCCTTATAGAACCAATGTGTCAGCGGATGGGAGCAAGACTTGTCTGGGCAATAAGTAATTTTATAGTATTTGCCTGTATGGCAGGAACTGCCATCATAACTTTAATATCCGTTGGGCTACATTCTAAAGGGATAGAACATGTTATTGGAGCGAATGAAACTATCAAAATTGCTTCTTTGGTTGTATTTTCTCTTCTCGGCTTTCCTCTTGCTATTACCTATAGTGTTCCCTTTTCTATAACGGCAGAGCTGACTGCTGATAGTGGTGGCGGGCAAGGACTGGCTATTGGAGTTTTGAATCTTGCAATTGTTGTACCACAGATGATTGTATCACTTGGTGCGGGGCCCTGGGATGCATTATTCGGTGGAGGAAATATTCCGGCCTTTGTTTTGGCTTCCTTGAGTGCTCTTGCAGCTGGAATTATCGCAATTCTCAAATTGCCTGATATATCTAGTAATTCTCTGAAGCCATCTGGTTTTCATTTTGGCTAA 1836 42.81 MAGNADSMSIKVPYRNLKEAEVEMVDVDDLHHRQNEQNSNSPSFSSRVSNGSPDLSSEIPPIRSKQSSLMTLILSCTIAAGVQFGWALQLSLLTPYIQTLGIGHAFSSFIWLCGPITGLVVQPCVGIWSDKCSSKYGRRRPFILAGSLMISVAVVLIGFSADIGYILGDTKEDCRKFKGTRTMGAFVFILGFWLLDLANNTVQGPARALLADLSGPDQRNSANAVFCSWMAFGNILGFSAGASGNWHRWFPFVLSRACCEACGNLKAAFIVAVVFLCLCTLVTLYFADEVPFTANHPHRLSDSAPLLNDHSQNDLHHSKPGTDVEFIDNVNGKLIENGNERDANLNHVKPKIREVPTESYTDGPGAVMVKLLTSLRHLPPAMHSVLIVMALSWLSWFPFFLFDTDWMGREVYHGDPTGNAANVQSYDQGVREGAFGLLLNSVVLAISSFLIEPMCQRMGARLVWAISNFIVFACMAGTAIITLISVGLHSKGIEHVIGANETIKIASLVVFSLLGFPLAITYSVPFSITAELTADSGGGQGLAIGVLNLAIVVPQMIVSLGAGPWDALFGGGNIPAFVLASLSALAAGIIAILKLPDISSNSLKPSGFHFG 611
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2956879 2963354 + Conep06aG0061600.1 Cone6ag0603 439487

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag0603 611 SUPERFAMILY MFS general substrate transporter 49 598 IPR036259 -
Cone6ag0603 611 Pfam Major Facilitator Superfamily 79 533 IPR011701 GO:0022857(InterPro)|GO:0055085(InterPro)
Cone6ag0603 611 PANTHER SUGAR TRANSPORTER 65 592 - GO:0008506(PANTHER)|GO:0016020(PANTHER)
Cone6ag0603 611 FunFam Sucrose transporter SUC2 70 294 - -
Cone6ag0603 611 CDD MFS_SLC45_SUC 72 593 - -
Cone6ag0603 611 Gene3D MFS general substrate transporter like domains 64 595 IPR036259 -
Cone6ag0603 611 MobiDBLite consensus disorder prediction 34 61 - -
Cone6ag0603 611 FunFam Sucrose transport protein SUT5 383 603 - -
Cone6ag0603 611 MobiDBLite consensus disorder prediction 36 61 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag0603 K15378 - - mdm:103402916 920.228
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone20ag0693 Cone-Chr20:4349018 Cone6ag0603 Cone-Chr6:2956879 6.42E-141 dispersed
Cone4ag1269 Cone-Chr4:10438174 Cone6ag0603 Cone-Chr6:2956879 9.92E-151 dispersed
Cone6ag0603 Cone-Chr6:2956879 Cone9ag0608 Cone-Chr9:2869636 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g880 Blo01g00422 . Bda01g02166 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0603 Cone9ag0608 . . . . . . . . . Bpe02g02352 Bma01g00089 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone20ag0693 . 18 487 Sucrose Transporter Gene Family AT1G22710 66.1 6.8e-185 644.4
Cone4ag1269 . 24 487 Sucrose Transporter Gene Family AT1G22710 55.7 1.2e-149 527.3
Cone20ag0693 . 19 484 Sucrose Transporter Gene Family AT2G14670 64.9 4.3e-176 615.1
Cone4ag1269 . 23 487 Sucrose Transporter Gene Family AT2G14670 53.8 9.9e-141 497.7
Cone20ag0693 . 19 414 Sucrose Transporter Gene Family AT1G66570 63.2 1.0e-147 520.8
Cone4ag1269 . 23 415 Sucrose Transporter Gene Family AT1G66570 52.7 1.0e-115 414.5
Cone6ag0603 . 155 611 Sucrose Transporter Gene Family AT2G02860 70.7 1.1e-186 650.2
Cone9ag0608 . 183 639 Sucrose Transporter Gene Family AT2G02860 69.8 1.1e-184 643.7
Cone20ag0693 . 18 484 Sucrose Transporter Gene Family AT5G06170 62.6 2.6e-165 579.3
Cone4ag1269 . 23 487 Sucrose Transporter Gene Family AT5G06170 51.6 3.4e-133 472.6
Cone20ag0693 . 19 484 Sucrose Transporter Gene Family AT5G43610 64.2 7.5e-173 604.4
Cone4ag1269 . 23 487 Sucrose Transporter Gene Family AT5G43610 52.7 3.0e-137 486.1
Cone4ag1269 . 11 493 Sucrose Transporter Gene Family AT1G09960 74.2 7.2e-211 730.7
Cone20ag0693 . 21 489 Sucrose Transporter Gene Family AT1G09960 52.5 7.6e-136 481.5
Cone20ag0693 . 18 500 Sucrose Transporter Gene Family AT1G71880 62.1 1.7e-175 613.2
Cone4ag1269 . 23 487 Sucrose Transporter Gene Family AT1G71880 55.3 2.3e-140 496.5
Cone20ag0693 . 18 487 Sucrose Transporter Gene Family AT1G71890 60.3 3.8e-167 585.5
Cone4ag1269 . 23 487 Sucrose Transporter Gene Family AT1G71890 50.9 1.0e-132 471.1
Cone20ag0693 . 18 500 Sucrose Transporter Gene Family AT1G71880 62.1 1.7e-175 613.2
Cone4ag1269 . 23 487 Sucrose Transporter Gene Family AT1G71880 55.3 2.3e-140 496.5
Cone20ag0693 . 18 487 Sucrose Transporter Gene Family AT1G22710 66.1 6.8e-185 644.4
Cone4ag1269 . 24 487 Sucrose Transporter Gene Family AT1G22710 55.7 1.2e-149 527.3
Cone6ag0603 . 155 611 Sucrose Transporter Gene Family AT2G02860 70.7 1.1e-186 650.2
Cone9ag0608 . 183 639 Sucrose Transporter Gene Family AT2G02860 69.8 1.1e-184 643.7
Cone4ag1269 . 11 493 Sucrose Transporter Gene Family AT1G09960 74.2 7.2e-211 730.7
Cone20ag0693 . 21 489 Sucrose Transporter Gene Family AT1G09960 52.5 7.6e-136 481.5
Cone20ag0693 . 18 487 Sucrose Transporter Gene Family AT1G71890 60.3 3.8e-167 585.5
Cone4ag1269 . 23 487 Sucrose Transporter Gene Family AT1G71890 50.9 1.0e-132 471.1
Cone20ag0693 . 19 484 Sucrose Transporter Gene Family AT5G43610 64.2 7.5e-173 604.4
Cone4ag1269 . 23 487 Sucrose Transporter Gene Family AT5G43610 52.7 3.0e-137 486.1
Cone20ag0693 . 19 414 Sucrose Transporter Gene Family AT1G66570 63.2 1.0e-147 520.8
Cone4ag1269 . 23 415 Sucrose Transporter Gene Family AT1G66570 52.7 1.0e-115 414.5
Cone20ag0693 . 19 484 Sucrose Transporter Gene Family AT2G14670 64.9 4.3e-176 615.1
Cone4ag1269 . 23 487 Sucrose Transporter Gene Family AT2G14670 53.8 9.9e-141 497.7
Cone20ag0693 . 18 484 Sucrose Transporter Gene Family AT5G06170 62.6 2.6e-165 579.3
Cone4ag1269 . 23 487 Sucrose Transporter Gene Family AT5G06170 51.6 3.4e-133 472.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005106 1 2 1 1 1 1 2 1 1 1 0 1 2 1 1 2 1 2 1 1 1 1 2 1 1 1 2 4 3 1 41