Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag0604 ATGAAAGTTGTTTCTGGAGTAGCATCGTTTTTAGGGAAGAGATCGATGTCGTATTCGAGACTCGAGATGGCGGCTCATGATCAAGAAGGTAACATGAACGGTGAAGAGGATTTATCGGACGATGACGGATCACAAGCAGGGGAGAAGAAGAGGAGGCTAAACATGGAACAAGTGAAGACACTAGAGAAGAACTTTGAGTTGGGTAATAAGCTTGAGCCTGAGAGGAAAATGCAGTTGGCTAGAGCTCTTGGTCTTCAGCCTAGACAGATTGCTATCTGGTTCCAGAACAGGAGAGCAAGGTGGAAGACAAAGCAATTGGAGAAAGACTATGATCTTCTTAAAAGGCAGTTTGAAGCCATTAAAGCTGAGAATGAAGCTCTTCAAGCTCGCAACCAAAAACTTCAAGCAGAGATGTTAGCACTAAAAAGTAGAGAACCGACAGAATCCATCAACCTGAACAAAGAAACAGATCAAGGATCTTGCAGCAATACAAGTGAGAACAGCTCTGATGATAACATCAAGCTCGATATCTCGAGAACTACTCCAACTATTGATAGCCCCTTATCAACTCATCATCATCATCCTCATGCCGGTCACGGCCAGATCATGTTTCAATCAGCAGCTTCCATAAGGCCTAATCCTCCTCCAGTTGTAGCTCAACTCTTTCAAGACTCTTCTTCATCGAGACATACGAATAGTAACATTCATGATCAAATGGTTAAAGAAGAAAGCTTGAGCAACATGTTCTGTGGGATTGATGATCAGTCTGGGTTTTGGCCTTGGTTGGAACAGCCTCATTTTAATTAA 807 42.75 MKVVSGVASFLGKRSMSYSRLEMAAHDQEGNMNGEEDLSDDDGSQAGEKKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDLLKRQFEAIKAENEALQARNQKLQAEMLALKSREPTESINLNKETDQGSCSNTSENSSDDNIKLDISRTTPTIDSPLSTHHHHPHAGHGQIMFQSAASIRPNPPPVVAQLFQDSSSSRHTNSNIHDQMVKEESLSNMFCGIDDQSGFWPWLEQPHFN 268
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2966504 2968962 + Conep06aG0061700.1 Cone6ag0604 439488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag0604 268 Gene3D - 41 110 - -
Cone6ag0604 268 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 29 230 IPR045224 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)|GO:0045893(PANTHER)
Cone6ag0604 268 Pfam Homeodomain 49 102 IPR001356 GO:0003677(InterPro)
Cone6ag0604 268 MobiDBLite consensus disorder prediction 145 174 - -
Cone6ag0604 268 FunFam Homeobox-leucine zipper protein ATHB-13 41 108 - -
Cone6ag0604 268 Coils Coil 96 144 - -
Cone6ag0604 268 CDD homeodomain 49 105 IPR001356 GO:0003677(InterPro)
Cone6ag0604 268 SMART HOX_1 47 108 IPR001356 GO:0003677(InterPro)
Cone6ag0604 268 MobiDBLite consensus disorder prediction 22 51 - -
Cone6ag0604 268 PRINTS Lambda-repressor HTH signature 75 84 IPR000047 GO:0003677(InterPro)
Cone6ag0604 268 PRINTS Lambda-repressor HTH signature 84 100 IPR000047 GO:0003677(InterPro)
Cone6ag0604 268 Pfam Homeobox associated leucine zipper 104 144 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Cone6ag0604 268 SUPERFAMILY Homeodomain-like 40 106 IPR009057 -
Cone6ag0604 268 ProSiteProfiles 'Homeobox' domain profile. 44 104 IPR001356 GO:0003677(InterPro)
Cone6ag0604 268 MobiDBLite consensus disorder prediction 152 174 - -
Cone6ag0604 268 MobiDBLite consensus disorder prediction 179 198 - -
Cone6ag0604 268 ProSitePatterns 'Homeobox' domain signature. 79 102 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone2ag0135 Cone-Chr2:717434 Cone6ag0604 Cone-Chr6:2966504 4.73E-27 dispersed
Cone3ag0210 Cone-Chr3:1128454 Cone6ag0604 Cone-Chr6:2966504 3.70E-20 dispersed
Cone6ag0604 Cone-Chr6:2966504 Cone9ag1462 Cone-Chr9:10830702 1.18E-25 dispersed
Cone13ag0969 Cone-Chr13:8272664 Cone6ag0604 Cone-Chr6:2966504 2.34E-68 wgd
Cone16ag0859 Cone-Chr16:9133183 Cone6ag0604 Cone-Chr6:2966504 1.16E-46 wgd
Cone16ag0147 Cone-Chr16:853202 Cone6ag0604 Cone-Chr6:2966504 6.29E-26 wgd
Cone19ag0959 Cone-Chr19:7311391 Cone6ag0604 Cone-Chr6:2966504 4.75E-66 wgd
Cone2ag0185 Cone-Chr2:961623 Cone6ag0604 Cone-Chr6:2966504 2.77E-46 wgd
Cone6ag0604 Cone-Chr6:2966504 Cone9ag0609 Cone-Chr9:2879326 1.50E-145 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46306 PF11265 Med25_VWA 1.40E-47 CL0128 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag0604 K09338 - rcu:8286990 364.77