Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag0610 ATGGTGAAGGGCCCTGGTCTGTACTCTGACATCGGCAAGAAAGCCAGAGATCTTCTGTACAAGGATTACCAGAGCGACCACAAGTTCACTGTTACCACTTACACATCCGCTGGAGTTGCACTAACCTCAACTGGAGTTAAGAAAGGCGATGCTTTTTTGGCCGATGTGAGCACTCAGCTGAAGAACAAGAACATCACAACTGATGTGAAAGTTGACACCAACTCCAATCTTCTCACAACCATCACTGTTGATGAACCTGCACCTGGGCTCAAGACAATCTTCAGCTTTATTGTTCCTGATCAGAGATCTGGAAAGGTTGAACTACAATACAAGCACGAGTATGCAGGAATTAGCACAGGCATTGGATTGACTGCAAGCCCCCTTGTTAATTTCTCTGGTGTGGTTGGGAATGAAGTACTCTCTCTGGGCACAGATCTCTCATTCGACACTGCATCAGGAAACATCACCAAATTGAATGCCGGATTGAGTTATACTCACTCCGACCTTGTTGCTTCCCTCACACTGAATGACAAGGGTGACACCCTTAACGCATCTTACTACCACCTTGTAAGCCTTCTGACCAACACAGCTGTAGGGGCAGAGTTCTCCCATAGCTTCTCGACCAATGAGAACTCTCTCACAATTGGAACTCAACATGCTTTAGACCCATTGACTTCAGTCAAGGCTCGGGTCAACAACTATGGTAAGGCGAATGCGCTTATTCAGCATGAGTGGCGTCCCAAATCCTTCTTCACCATTTCCGGGGAAGTGGATACAAGGGCCATTGAGAAGAGTGCTAAGATTGGTCTAGCTTTGGCCCTTAAGCCCTAA 831 46.93 MVKGPGLYSDIGKKARDLLYKDYQSDHKFTVTTYTSAGVALTSTGVKKGDAFLADVSTQLKNKNITTDVKVDTNSNLLTTITVDEPAPGLKTIFSFIVPDQRSGKVELQYKHEYAGISTGIGLTASPLVNFSGVVGNEVLSLGTDLSFDTASGNITKLNAGLSYTHSDLVASLTLNDKGDTLNASYYHLVSLLTNTAVGAEFSHSFSTNENSLTIGTQHALDPLTSVKARVNNYGKANALIQHEWRPKSFFTISGEVDTRAIEKSAKIGLALALKP 276
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3018367 3020802 + Conep06aG0062800.1 Cone6ag0610 439494

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag0610 276 Gene3D Porin 1 275 IPR023614 -
Cone6ag0610 276 PANTHER VOLTAGE-DEPENDENT ANION-SELECTIVE CHANNEL 1 276 IPR001925 GO:0005741(InterPro)|GO:0005741(PANTHER)|GO:0008308(InterPro)|GO:0008308(PANTHER)|GO:0098656(InterPro)
Cone6ag0610 276 FunFam Outer mitochondrial membrane protein porin 1 275 - -
Cone6ag0610 276 ProSitePatterns Eukaryotic mitochondrial porin signature. 219 241 IPR001925 GO:0005741(InterPro)|GO:0008308(InterPro)|GO:0098656(InterPro)
Cone6ag0610 276 Pfam Eukaryotic porin 4 269 IPR027246 GO:0005741(InterPro)|GO:0055085(InterPro)
Cone6ag0610 276 CDD Porin3_VDAC 5 275 IPR001925 GO:0005741(InterPro)|GO:0008308(InterPro)|GO:0098656(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag0610 K15040 - - cit:102611592 497.664
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone18ag1336 Cone-Chr18:9237215 Cone6ag0610 Cone-Chr6:3018367 1.86E-153 dispersed
Cone2ag0180 Cone-Chr2:939522 Cone6ag0610 Cone-Chr6:3018367 7.91E-155 dispersed
Cone6ag0610 Cone-Chr6:3018367 Cone8ag0159 Cone-Chr8:831442 2.57E-86 dispersed
Cone16ag0867 Cone-Chr16:9171568 Cone6ag0610 Cone-Chr6:3018367 8.37E-150 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g853 . Blo16g01132 . Bda11g01234 Bpe13g01431 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0610 . . . . . . . . Bda11g01234 . . . Bma06g00659 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001404 4 2 2 6 4 2 3 2 2 2 1 2 2 2 2 2 2 5 1 2 2 2 2 2 2 2 2 3 4 2 73