Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag0614 ATGGCAGATTTGAGAATATTTCACAATTCAGAGCCAAACGTTCTTGTTTTAAACGAAAAGCTTCCTTGCTCTTCCGATATTCTCGAGTCTCTCTGGTTACCCACCTCCGCCCCTCCTTTTCGAGGTTCGAGATCAATGTTAAACTTTGAGAATGTTAGTGGAAGCGAGACAAAAGGGTCATTCTTCCAATGCCTTGAAAAGGAAGAAGAAAGCCATGACGAAGATTACAGCGAATGCTTTCATAAACCCGGAAAGAAAAGGCGGCTTAGTGTCGACCAGGTTCAGTTTCTGGAGAAAAGCTTTCAGGTAGAAAACAAACTTGAACCTGAAAGGAAAGTCCAACTTGCAAAGGAAATTGGTCTTCTTCCAAGGCAAGTTGCGATTTGGTTTCAAAACCGGCGAGCTCGTTACAAGACTAAACAGATTGAAAAAGACTATGATTCTTTGAAATCTAGCTATGATAAGCTCAAGTCTAATTATGACAACCTTCTCGATGAGAAAGATCAATTGAAAGCTGTTAATGGACTCAAAGGTAAGTTATTGTCAAGGGAAAAGAAGGAAGAGCTTGAAAAACCGGTTTCTAGCTCGGGAAATTCGGAGAATGTTATGTGCAAACAAGAAGACATAAGCTCAACTAAGAGTGATGTTTTAGACTCGGACAGTCTAATTGAGAACCACAATTCTTCAATGGTCGAGCCGGCTGGCTCGTCTCATGTATTCGAAGAACAAGACCAATTGTCGGATAATTTCTCACATGATGAAGAAGATAACTTGAGCAGAACTCTTTTGCCGGTTTGCTTTCCGAAACTTGAAGAGTGTTATTACGGCGACGAGCCGCCTGCTAATTCGTGCAATTTTGGATTCCCATTTGAGGACCAAACGTTCTGTTTTTGGTCTTACTAA 903 41.09 MADLRIFHNSEPNVLVLNEKLPCSSDILESLWLPTSAPPFRGSRSMLNFENVSGSETKGSFFQCLEKEEESHDEDYSECFHKPGKKRRLSVDQVQFLEKSFQVENKLEPERKVQLAKEIGLLPRQVAIWFQNRRARYKTKQIEKDYDSLKSSYDKLKSNYDNLLDEKDQLKAVNGLKGKLLSREKKEELEKPVSSSGNSENVMCKQEDISSTKSDVLDSDSLIENHNSSMVEPAGSSHVFEEQDQLSDNFSHDEEDNLSRTLLPVCFPKLEECYYGDEPPANSCNFGFPFEDQTFCFWSY 300
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3041427 3043130 + Conep06aG0063200.1 Cone6ag0614 439498

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag0614 300 CDD homeodomain 83 141 IPR001356 GO:0003677(InterPro)
Cone6ag0614 300 Pfam Homeobox associated leucine zipper 140 180 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Cone6ag0614 300 MobiDBLite consensus disorder prediction 227 255 - -
Cone6ag0614 300 SUPERFAMILY Homeodomain-like 73 142 IPR009057 -
Cone6ag0614 300 Gene3D - 88 133 - -
Cone6ag0614 300 Pfam Homeodomain 85 138 IPR001356 GO:0003677(InterPro)
Cone6ag0614 300 Coils Coil 139 173 - -
Cone6ag0614 300 Gene3D - 134 179 - -
Cone6ag0614 300 FunFam homeobox-leucine zipper protein ATHB-6-like 88 134 - -
Cone6ag0614 300 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 68 245 IPR045224 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)|GO:0045893(PANTHER)
Cone6ag0614 300 ProSitePatterns 'Homeobox' domain signature. 115 138 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Cone6ag0614 300 ProSiteProfiles 'Homeobox' domain profile. 80 140 IPR001356 GO:0003677(InterPro)
Cone6ag0614 300 SMART HOX_1 82 144 IPR001356 GO:0003677(InterPro)
Cone6ag0614 300 MobiDBLite consensus disorder prediction 227 244 - -
Cone6ag0614 300 PRINTS Lambda-repressor HTH signature 111 120 IPR000047 GO:0003677(InterPro)
Cone6ag0614 300 PRINTS Lambda-repressor HTH signature 120 136 IPR000047 GO:0003677(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag0614 K09338 - - vvi:100241577 302.753
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone6ag0614 Cone-Chr6:3041427 Cone9ag1462 Cone-Chr9:10830702 1.21E-24 dispersed
Cone19ag0090 Cone-Chr19:519877 Cone6ag0614 Cone-Chr6:3041427 4.06E-54 wgd
Cone2ag0135 Cone-Chr2:717434 Cone6ag0614 Cone-Chr6:3041427 8.75E-26 wgd
Cone6ag0614 Cone-Chr6:3041427 Cone9ag0617 Cone-Chr9:2933324 9.45E-175 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g846 . Blo16g01135 . Bda11g01236 Bpe13g00467 . . . . . . . . . Sed04g0677 . . Bhi07g01613 Tan04g1126 Cmetu10g1215 Lac13g0276 Hepe10g1711 . . Cla05g02477 Cam05g2661 Cec05g2695 Cco05g2730 Clacu05g2663 Cmu05g2517 Cre05g2632 . . Cone6ag0614 Cone9ag0617 Lsi04g00464 Csa05g02414 Chy10g00972 Cme10g00452 . . . Bda11g01236 . . Bma01g00080 Bma06g00658 . . . . . Car04g01668 Car15g00313 Cpe13g00941 . . . . . . . . . . . . . . . . . Chy09g00265 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003231 3 2 3 3 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 3 3 2 50
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46309 PF07842 GCFC 2.00E-30 No_clan Cone TF