Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag0618 ATGGCAACATCACTCAAAGAATATCTCAAACGCTACGAAAGCAATGCCGAAGAAGAGAAAAAGAGTGGTAAGAAGAAGAAGAAGAAGACAAAGACTAAGCCAGATGCAGCAGGTGTTTTGGTTGTAGATGAAGATCCTGTGTGGCAGAAACCGGTAAACATTGAAGAAGAAAATGGCAATGATTCAGCCGATGAAGAGAAGCCTCAAGTTGATGAAGATATTGAGGTTAAGAGGATGAAAAGGCTTGAACTATTAAGAGCCAGACGTCCATATAATTCCATATCGGAAGATGGAAGTGGTTGGGTTTCGCTCTCTCATGAACACGGGAATCTTAGTATCCCAGAATCCAATATATCTCCACCTCGTAAGTCTAGAGCTCGAAATAACACACCATCTCCAGAACCCGAGCCCGAACCCTTAGATTCCAACGTTGAAGACAATGATCTATCACCTCGTAGAAAGAAAAGGCACCATACTCCATCACCTACTCTCCCAAGCTCTGACTTTTCTCCACCTCGTAAACATAGGGCGAGGAATGACACACCTTCTCCAAGAAAAGAAGAAGAAGAAGAAGATGATGATGACTTATCACCTCCCCGTCAGAAAAGGAAACGTCGCCATGCTCAATCCCCTGCACCTGATAGAAAAAAAGCTTCTTCTGTTGCTATGGATTCTGACTTCTCCCCACCTAGAAGGCCTCCTTGCCACCCATCGAATGTTAGTGAAAGGGGCAGGTCTGGTACCCAAGATGACTTCTCCCCACGGAAAAGCAAGAAGGATGTCTCTTTGCCAGCGGACATTTCTTCACCAAGGAGAGACCGGAAGGTAGTGGGTGTCTCAACCTCCTCGAAAGAGCAGTGGAAAACTGGTCTGATTACTGGTCGAGAAATGAAGGAAGAGATTGCTCAAACTAAGAAAGAGGATTGGTTGAGGTTTAAAGAGATGGATCCCTCCATTAGCGGACGAGGTGCTGAGCCTGTATATCGTGACAGAATTAAAGGGGAACGCATTACAAAAGAGGAGTTCTTGAAATCGCAGAAAAAAGTAGAAGAAAAGCCCAAGGAGATAAAGTTGGAATGGGGCAGGGGTTTAGCTCAAAAGCGGGAAGCTGAAGCTCGTCTTCAAGAATTAGAACTTGAGAAGGACAAACCATTTGCACGAACCAGAGATGATCCTGATCTTGACAGGCATTTTAAGGAAAAAATTAGATGGGGTGATCCTATGGCACACTTGGTCAAGAAAAAGAATCCCGAACTGCTTCTCCCAAACCTGGGGGATAATGAGAAGATGCAGGAATCTGGTTTTGTGGTTCCTCAGGACATTCCTTCTCATAGCTGGCTAAAGAGAGGATTGGACGCAGCACCTAATAGATACGGTATAAGGCCTGGAAGACATTGGGACGGAGTTGATCGTAGCACTGGGTATGAGAAGCAATTGTTCAAAAGGACAAATGAGAAACAAGCTACAGAGAGGGAAGCTTATTTGTGGTCTGTTTCCGATATGTGA 1506 44.75 MATSLKEYLKRYESNAEEEKKSGKKKKKKTKTKPDAAGVLVVDEDPVWQKPVNIEEENGNDSADEEKPQVDEDIEVKRMKRLELLRARRPYNSISEDGSGWVSLSHEHGNLSIPESNISPPRKSRARNNTPSPEPEPEPLDSNVEDNDLSPRRKKRHHTPSPTLPSSDFSPPRKHRARNDTPSPRKEEEEEDDDDLSPPRQKRKRRHAQSPAPDRKKASSVAMDSDFSPPRRPPCHPSNVSERGRSGTQDDFSPRKSKKDVSLPADISSPRRDRKVVGVSTSSKEQWKTGLITGREMKEEIAQTKKEDWLRFKEMDPSISGRGAEPVYRDRIKGERITKEEFLKSQKKVEEKPKEIKLEWGRGLAQKREAEARLQELELEKDKPFARTRDDPDLDRHFKEKIRWGDPMAHLVKKKNPELLLPNLGDNEKMQESGFVVPQDIPSHSWLKRGLDAAPNRYGIRPGRHWDGVDRSTGYEKQLFKRTNEKQATEREAYLWSVSDM 501
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3067278 3071044 + Conep06aG0063600.1 Cone6ag0618 439502

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag0618 501 MobiDBLite consensus disorder prediction 248 279 - -
Cone6ag0618 501 Pfam Pre-mRNA-splicing factor of RES complex 326 484 IPR018609 -
Cone6ag0618 501 MobiDBLite consensus disorder prediction 70 87 - -
Cone6ag0618 501 Coils Coil 2 29 - -
Cone6ag0618 501 MobiDBLite consensus disorder prediction 171 185 - -
Cone6ag0618 501 PANTHER BUD13 HOMOLOG 3 501 IPR051112 GO:0000398(PANTHER)|GO:0003723(PANTHER)|GO:0005684(PANTHER)|GO:0070274(PANTHER)
Cone6ag0618 501 MobiDBLite consensus disorder prediction 1 291 - -
Cone6ag0618 501 MobiDBLite consensus disorder prediction 96 131 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag0618 K13106 - - vvi:100245538 582.408
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone6ag0618 Cone-Chr6:3067278 Cone9ag0620 Cone-Chr9:2948412 2.86E-159 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g632 Blo02g01002 . . Bda08g00618 Bpe05g00538 . . . Cmo06g00861 . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0618 Cone9ag0620 . . . . . . . . . . . . . . . Cma06g00839 . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004758 1 4 2 1 1 1 2 1 1 2 1 1 3 1 1 2 1 2 1 1 1 1 1 1 1 1 1 3 1 1 42