Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cone6ag0622 | ATGGCTGAATCGGTGGAGCTTCCGAGTAGACTCGGGATCCTTCCTTTCAGGAACAAGGTCCTCTTACCTGGTGCAATAATCCGTATTCGGTGCACTTCATCAAGCAGCGTGAAGCTGGTGGAGCAAGAGTTGTGGCAGAGAGAAGAGAAGGGATTGATTGGTATTCTTCCTGTTCGTGACGCTGCTGAGGCAACATCAATAGGTCCCATCTTATCACCAGGTATGGGAAGTGATTCAGGGGACCGTAGCTTGCGAATTCAAGGTGGAAACTCAGATTCTCACAGGCTTGATGGAAAAAATGAGCAGGAAGTTATTCGGTGGCATACAAGGGGAGTTGCTGCACGTGCCTTACATCTGTCTAGAGGTGTGGAGAAACCAAGTGGAAGGGTCACTTATACAGTTGTCCTTGAAGGTTTGTGCAGATTCAACGTCCAAGAACTTAGCACTAGAGGAACATATTATACTGCAAGGATCTCTCCTCTTGAAATAACAAAGGCAGAACTGGAGCAAGTGGAGCAAGATCCAGATTTCATTTCTCTGTCCCGGCAGTTCAAAGCAACTGCTATGGAGCTGATTTCTGTTCTAGAGCAGAAACAAAAAACTGGAGGAAGAACAAAAGTTCTTTTGGAAACAGTTCCAGTTCGTAAATTGGCAGACATATTTGTTGCCAGCTTTGAAATAAGTTTTGAAGAGCAATTGTCTATGCTGGATTCAGTTGATTTAAAAGAAAGGCTTTCCAAAGCTATGGAGTTAGTTGACAGGCATTTACAGTCAATACGAGTTGCTGAGAAGATTACACAAAAGGTTGAGGGTCAGCTATCAAAATCACAGAAAGAATTTCTTTTGCGCCAGCAGATGAGAGCTATAAAAGAGGAGCTTGGTGACAATGATGATGATGAAGATGATGTAGCTGCTCTGGAGAGAAAAATGCAGAGTGCAGGAATGCCTTCAAATATTTGGAAGCATGCACAAAGAGAGTTGAGGACACTTAAAAAGATGCAACCTCAGCAGCCTGGATATAACAGTTCCCGTGTTTACCTGGAGCTTCTTGCCGACCTTCCTTGGCAAAAGGCAACTGAAGAACAAGAATTAGACTTGAAAGCTGCAAAGGAACGTCTTGACCGTGATCATTATGGTCTTGTCAAGGTCAAGCAACGGATCATTGAGTATCTAGCTGTTCGCAAGCTTAAGCCAGATGCAAGGGGTCCAGTATTGTGCTTTGTTGGTCCACCAGGTGTGGGGAAAACATCTCTGGCATCATCTATTGCTGCTGCTTTGGGCAGGAAGTTTATACGTATATCCCTTGGTGGTGTTAAGGATGAGGCTGACATTAGAGGCCATAGAAGGACATACATTGGAAGCATGCCAGGGCGTCTCATTGATGGATTGAAGAGGGTAGCTGTTTGCAATCCAGTCATGCTACTAGATGAAATTGACAAGACAGGTTCTGATGTGCGTGGGGATCCTGCTTCAGCCTTACTGGAGGTTCTCGATCCTGAGCAGAACACAAAATTCAATGATCACTATTTGAATGTGCCATATGACCTTTCAAAAGTAATTTTTGTGGCCACTGCTAATAAAGCACAGCCTATTCCCCCTCCACTGCTAGACAGAATGGAGGTCATTGAGCTGCCTGGATATACGCCTGAAGAAAAGCTCAAGATTGCAATGCGACATCTAATTCCAAGAGTCCTTGAGCAGCACGGGTTGACCTCTGATTTTCTTCAAATTCCCGAGGCTATCGTGAAGCATGTTATTCGAAGGTACACTAGAGAGGCTGGTGTTCGGAGTCTTGAGAGGAATCTTTCTGCCTTGGCCCGTGCAGCAGCAGTTAGAGTTGTGGAACAAGAACAATCTGTGCCAATTTGCAAAGGTGTGCAACAGCTCACATCACCATTGATAGAAAACAGACTCGCTGATGGCGCTGAAGTAGAAATGGAGGTCATCCCATTGGAAGTAAACAATGATGAGATATCAAATACGTTTAGGACTGCGTCACCTTTGTTAGTGGATGAGACCATGCTGGAAAAAATATTGGGGCCACCGAGGTTTGATGATAGAGAGGCTGCAGAACGAGTTGCATCCCCCGGGATATCTGTTGGGCTTGTTTGGACTGCATTTGGAGGAGAGGTCCAGTTTGTGGAGGCTACAGCAATGGTGGGAAAGGGTGAATTACATCTCACCGGCCAGCTTGGTGATGTTATCAAAGAATCAGCCCAAATAGCACTGACATGGGTTAGAGCGAGGGCAACAGATCTTAGATTGACAAGTGCTGGAGAAACCAATATATTGGAGGGCCGGGATATTCACATACACTTCCCTGCTGGTGCAGTTCCTAAAGATGGGCCCTCAGCAGGGGTGACCCTAGTAACTGCCCTAGTCTCTTTGCTCAGTCAGAAAAAGGTTAGAGCAGATACTGCGATGACAGGAGAGATGACTCTGAGGGGTCTTGTGCTTCCTGTTGGTGGTATCAAGGACAAGATATTAGCAGCACATCGTTATGGGGTCAAAAGAGTAATCCTCCCAGAGAGAAACTTGAAAGATTTAGTGGAAGTACCTTCAGCTGTGCTTGCCAGTTTGGAGATATTACTTGCAAAACGCATGGAAGATGTTTTGGAGCAGGCTTTTGAAGGCGGATGCCCATGGAGGCAACACTCCAAGTTATGA | 2667 | 45.56 | MAESVELPSRLGILPFRNKVLLPGAIIRIRCTSSSSVKLVEQELWQREEKGLIGILPVRDAAEATSIGPILSPGMGSDSGDRSLRIQGGNSDSHRLDGKNEQEVIRWHTRGVAARALHLSRGVEKPSGRVTYTVVLEGLCRFNVQELSTRGTYYTARISPLEITKAELEQVEQDPDFISLSRQFKATAMELISVLEQKQKTGGRTKVLLETVPVRKLADIFVASFEISFEEQLSMLDSVDLKERLSKAMELVDRHLQSIRVAEKITQKVEGQLSKSQKEFLLRQQMRAIKEELGDNDDDEDDVAALERKMQSAGMPSNIWKHAQRELRTLKKMQPQQPGYNSSRVYLELLADLPWQKATEEQELDLKAAKERLDRDHYGLVKVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIAAALGRKFIRISLGGVKDEADIRGHRRTYIGSMPGRLIDGLKRVAVCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNTKFNDHYLNVPYDLSKVIFVATANKAQPIPPPLLDRMEVIELPGYTPEEKLKIAMRHLIPRVLEQHGLTSDFLQIPEAIVKHVIRRYTREAGVRSLERNLSALARAAAVRVVEQEQSVPICKGVQQLTSPLIENRLADGAEVEMEVIPLEVNNDEISNTFRTASPLLVDETMLEKILGPPRFDDREAAERVASPGISVGLVWTAFGGEVQFVEATAMVGKGELHLTGQLGDVIKESAQIALTWVRARATDLRLTSAGETNILEGRDIHIHFPAGAVPKDGPSAGVTLVTALVSLLSQKKVRADTAMTGEMTLRGLVLPVGGIKDKILAAHRYGVKRVILPERNLKDLVEVPSAVLASLEILLAKRMEDVLEQAFEGGCPWRQHSKL | 888 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 6 | 3091300 | 3098185 | - | Conep06aG0064100.1 | Cone6ag0622 | 439506 |
Annotation
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cone6ag0622 | 888 | Gene3D | - | 305 | 353 | - | - | |
| Cone6ag0622 | 888 | SUPERFAMILY | PUA domain-like | 11 | 253 | IPR015947 | - | |
| Cone6ag0622 | 888 | Gene3D | - | 695 | 881 | IPR014721 | - | |
| Cone6ag0622 | 888 | Gene3D | - | 545 | 639 | - | - | |
| Cone6ag0622 | 888 | Gene3D | - | 366 | 544 | IPR027417 | - | |
| Cone6ag0622 | 888 | Hamap | Lon protease homolog 2, peroxisomal [LONP2]. | 3 | 888 | IPR027501 | GO:0004252(InterPro)|GO:0006515(InterPro) | |
| Cone6ag0622 | 888 | SMART | AAA_5 | 401 | 546 | IPR003593 | GO:0016887(InterPro) | |
| Cone6ag0622 | 888 | ProSiteProfiles | Lon proteolytic domain profile. | 693 | 878 | IPR008269 | GO:0004176(InterPro)|GO:0004252(InterPro)|GO:0006508(InterPro) | |
| Cone6ag0622 | 888 | Pfam | ATPase family associated with various cellular activities (AAA) | 405 | 542 | IPR003959 | GO:0005524(InterPro)|GO:0016887(InterPro) | |
| Cone6ag0622 | 888 | Coils | Coil | 289 | 309 | - | - | |
| Cone6ag0622 | 888 | ProSitePatterns | ATP-dependent serine proteases, lon family, serine active site. | 781 | 789 | IPR008268 | GO:0004176(InterPro)|GO:0004252(InterPro)|GO:0006508(InterPro) | |
| Cone6ag0622 | 888 | PANTHER | ATP DEPENDENT LON PROTEASE FAMILY MEMBER | 6 | 886 | IPR027065 | GO:0004176(InterPro)|GO:0004252(InterPro)|GO:0005524(InterPro)|GO:0005782(PANTHER)|GO:0006625(PANTHER)|GO:0016485(PANTHER)|GO:0030163(InterPro) | |
| Cone6ag0622 | 888 | Pfam | ATP-dependent protease La (LON) substrate-binding domain | 12 | 254 | IPR003111 | - | |
| Cone6ag0622 | 888 | MobiDBLite | consensus disorder prediction | 67 | 97 | - | - | |
| Cone6ag0622 | 888 | PIRSF | Lon_proteas | 1 | 635 | IPR004815 | GO:0004176(InterPro)|GO:0005524(InterPro)|GO:0006508(InterPro) | |
| Cone6ag0622 | 888 | PIRSF | Lon_proteas | 652 | 879 | IPR004815 | GO:0004176(InterPro)|GO:0005524(InterPro)|GO:0006508(InterPro) | |
| Cone6ag0622 | 888 | FunFam | Lon protease homolog 2, peroxisomal | 172 | 297 | - | - | |
| Cone6ag0622 | 888 | SMART | lon_5 | 10 | 254 | IPR003111 | - | |
| Cone6ag0622 | 888 | Gene3D | - | 1 | 162 | IPR046336 | - | |
| Cone6ag0622 | 888 | Gene3D | - | 171 | 297 | - | - | |
| Cone6ag0622 | 888 | PRINTS | Endopeptidase La (Lon) serine protease (S16) signature | 778 | 797 | - | - | |
| Cone6ag0622 | 888 | PRINTS | Endopeptidase La (Lon) serine protease (S16) signature | 409 | 428 | - | - | |
| Cone6ag0622 | 888 | PRINTS | Endopeptidase La (Lon) serine protease (S16) signature | 831 | 849 | - | - | |
| Cone6ag0622 | 888 | PRINTS | Endopeptidase La (Lon) serine protease (S16) signature | 696 | 712 | - | - | |
| Cone6ag0622 | 888 | PRINTS | Endopeptidase La (Lon) serine protease (S16) signature | 808 | 827 | - | - | |
| Cone6ag0622 | 888 | FunFam | Lon protease homolog 2, peroxisomal | 366 | 544 | - | - | |
| Cone6ag0622 | 888 | CDD | RecA-like_Lon | 366 | 547 | - | - | |
| Cone6ag0622 | 888 | SUPERFAMILY | Ribosomal protein S5 domain 2-like | 696 | 875 | IPR020568 | - | |
| Cone6ag0622 | 888 | FunFam | Lon protease homolog | 304 | 353 | - | - | |
| Cone6ag0622 | 888 | ProSiteProfiles | Lon N-terminal domain profile. | 11 | 256 | IPR003111 | - | |
| Cone6ag0622 | 888 | NCBIfam | endopeptidase La | 13 | 876 | IPR004815 | GO:0004176(InterPro)|GO:0005524(InterPro)|GO:0006508(InterPro) | |
| Cone6ag0622 | 888 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 354 | 619 | IPR027417 | - | |
| Cone6ag0622 | 888 | Pfam | Lon protease AAA+ ATPase lid domain | 566 | 618 | IPR054594 | - | |
| Cone6ag0622 | 888 | Pfam | Lon protease (S16) C-terminal proteolytic domain | 670 | 877 | IPR008269 | GO:0004176(InterPro)|GO:0004252(InterPro)|GO:0006508(InterPro) | |
| Cone6ag0622 | 888 | FunFam | Lon protease homolog 2, peroxisomal | 690 | 881 | - | - |
Pathway
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cone6ag0622 | K01338 | - | - | mdm:103411613 | 1509.97 |
Dupl-types
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cone6ag0622 | Cone-Chr6:3091300 | Cone9ag0625 | Cone-Chr9:2964845 | 0 | wgd |
Deco-Alignment
| Select | Vvi1 | Blo1 | Blo2 | Bda1 | Bda2 | Bpe1 | Bpe2 | Bma1 | Bma2 | Cmo1 | Cmo2 | Cma1 | Cma2 | Car1 | Car2 | Sed1 | Cpe1 | Cpe2 | Bhi1 | Tan1 | Cmetu1 | Lac1 | Hepe1 | Mch1 | Lcy1 | Cla1 | Cam1 | Cec1 | Cco1 | Clacu1 | Cmu1 | Cre1 | Cone1 | Cone2 | Cone3 | Cone4 | Lsi1 | Csa1 | Chy1 | Cme1 | Blo3 | Blo4 | Bda3 | Bda4 | Bpe3 | Bpe4 | Bma3 | Bma4 | Sed2 | Cmo3 | Cmo4 | Cma3 | Cma4 | Car3 | Car4 | Cpe3 | Cpe4 | Bhi2 | Tan2 | Cmetu2 | Lac2 | Hepe2 | Mch2 | Lcy2 | Cla2 | Cam2 | Cec2 | Cco2 | Clacu2 | Cmu2 | Cre2 | Lsi2 | Csa2 | Chy2 | Cme2 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Vvi2g584 | Blo02g01005 | . | . | . | Bpe05g00540 | . | . | . | Cmo06g00858 | Cmo16g01139 | . | . | . | . | . | Cpe14g00900 | . | Bhi11g00104 | . | . | . | . | Mch10g1616 | . | Cla10g00192 | Cam10g0198 | Cec10g0204 | Cco10g0205 | Clacu10g0202 | Cmu10g1046 | Cre10g0452 | . | . | Cone6ag0622 | Cone9ag0625 | Lsi07g01235 | . | . | Cme06g02505 | . | . | . | . | . | . | Bma05g00397 | . | . | . | . | Cma06g00835 | Cma16g01089 | . | Car16g01031 | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | Csa03g00209 | . | . |
Syn-Orthogroups
| Select | Orthogroup | Bda | Bhi | Blo | Bma | Bpe | Cam | Car | Cco | Cec | Chy | Cla | Clacu | Cma | Cme | Cmetu | Cmo | Cmu | Cone | Cpe | Cre | Csa | HCH | Hepe | Lac | Lcy | Lsi | Mch | Sed | Tan | Vvi | Total |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| OG0008731 | 0 | 3 | 1 | 1 | 1 | 1 | 2 | 1 | 1 | 1 | 1 | 1 | 2 | 1 | 1 | 2 | 1 | 2 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 35 |