Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag0623 ATGGCAGTTCAAGCTCAATACCCCTCTAATCATGTCTTCCTCTTCAACAAAAACAATAATCAAGCTGAAGGCCATATTGATTATTCATTACAGTCCCATGAACCAGAGGCAGGAGGAGGATTGTTCCTTGACCAATCACATGTTCGATTTAACCATGCAAGAAGCTCAGGCACCAACAACTTGAATAATAATCCACGCAAACGAGGAAGAACAGAAGCTGCTTCACCTTCGATCATCCTCAATCCATTATCTAATTGTAACACTACTACCGATTTGCAGCAATCTCATCATTTTCCTCCTCCTCCTCCTCCTCCTCCTCAACCTCACCAACCTCATCAGCTCATGATCAATCTCTCTCAGCTTCATAACCACCACCAACCTCACATCAATGTCGTTTCCACCGGCCTCCGATTATCTTCCGGCGACCAAAAATGCCAGTTACAGCAGTTACACCAAAACAACCTCGTTTCGCAATCATCTACTGGTTTCTTCTCTCTATCACCAGATCAAGAAGACAGCGAATACTTCGCCTCTCATATTAAACAACAACGAGACGAATTAGACCGATTCCTTCAAGCTCAGGCGGAGCAGCTGCGCCGCACATTAGCAGAGAAACGGGAGAGACAATACCGCGCGCTTCTGCGCGCGGCGGAGGAAACAGTTGCCAGGCGGTTGAGAGAGAAAGAGGCGGAGGTCGAAAAGGCCGCGCGAAGGAACTTCGATTTGGAAGCACGCTCCGCGCAGCTTAGCGTAGAGGCGCAGGTTTGGCAAGCGAAGGCCAGGGCACAAGAGGCCACGGCGAGGTCACTACAAGCTCAACTGCAACAAGCTATAGTGAGCGGGGGTGTAATGGGCGCGCAGGATCAGAGAGATGGAACAGATGGCGGGGGAGGCGTAGAAGGTGAAGCCGAAGATGCTGAGTCGTGCTATATCGATCCGGCCCGGGTCGTAGAATCGGGTCCGAATTGTAGAGCGTGCAGGAAACGCGCCGCGTCGGTGGTGATTCTACCGTGTCGGCACCTCTGCCTCTGTACGGACTGCGATCGGGTGGTTCAGGCCTGCCCACTTTGTTTCTCTTTGAGGAATTCCAGTGTCGAAGTTTTTCTCTCTTAA 1113 50.85 MAVQAQYPSNHVFLFNKNNNQAEGHIDYSLQSHEPEAGGGLFLDQSHVRFNHARSSGTNNLNNNPRKRGRTEAASPSIILNPLSNCNTTTDLQQSHHFPPPPPPPPQPHQPHQLMINLSQLHNHHQPHINVVSTGLRLSSGDQKCQLQQLHQNNLVSQSSTGFFSLSPDQEDSEYFASHIKQQRDELDRFLQAQAEQLRRTLAEKRERQYRALLRAAEETVARRLREKEAEVEKAARRNFDLEARSAQLSVEAQVWQAKARAQEATARSLQAQLQQAIVSGGVMGAQDQRDGTDGGGGVEGEAEDAESCYIDPARVVESGPNCRACRKRAASVVILPCRHLCLCTDCDRVVQACPLCFSLRNSSVEVFLS 370
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3112357 3114148 + Conep06aG0064200.1 Cone6ag0623 439507

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag0623 370 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 312 370 IPR013083 -
Cone6ag0623 370 Coils Coil 218 245 - -
Cone6ag0623 370 MobiDBLite consensus disorder prediction 77 95 - -
Cone6ag0623 370 MobiDBLite consensus disorder prediction 96 111 - -
Cone6ag0623 370 ProSiteProfiles Zinc finger RING-type profile. 323 357 IPR001841 -
Cone6ag0623 370 PANTHER SBP (S-RIBONUCLEASE BINDING PROTEIN) FAMILY PROTEIN 95 370 - GO:0004842(PANTHER)
Cone6ag0623 370 Pfam Zinc finger, C3HC4 type (RING finger) 322 357 - -
Cone6ag0623 370 Coils Coil 188 208 - -
Cone6ag0623 370 MobiDBLite consensus disorder prediction 53 112 - -
Cone6ag0623 370 CDD mRING-HC-C3HC5_CGRF1-like 323 357 - -
Cone6ag0623 370 FunFam probable BOI-related E3 ubiquitin-protein ligase 2 305 369 - -
Cone6ag0623 370 PIRSF SBP1_RNase_bind 1 370 - -
Cone6ag0623 370 MobiDBLite consensus disorder prediction 53 70 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag0623 K19042 - - cit:102616013 357.451
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone6ag0623 Cone-Chr6:3112357 Cone9ag0396 Cone-Chr9:1822035 1.20E-21 dispersed
Cone12ag0432 Cone-Chr12:2544320 Cone6ag0623 Cone-Chr6:3112357 7.31E-97 wgd
Cone6ag0623 Cone-Chr6:3112357 Cone8ag0444 Cone-Chr8:2787220 3.15E-84 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g795 . . . . . Bpe10g00820 . Bma15g00202 Cmo04g01676 . . . . . Sed08g1729 . Cpe01g01416 Bhi07g01666 Tan04g1167 Cmetu03g1719 Lac13g0243 Hepe10g1681 . . Cla05g02507 Cam05g2691 Cec05g2724 Cco05g2759 Clacu05g2694 Cmu05g2548 Cre05g2663 . . Cone6ag0623 Cone9ag0638 Lsi04g00506 Csa05g02377 Chy10g00942 Cme10g00485 . . . . Bpe11g01744 . . . . . . Cma04g01601 . . . . . . . . . . . . . . . . . . . . . . .
Vvi2g582 . Blo03g00131 Bda06g01301 Bda08g00614 Bpe05g00542 Bpe07g00204 Bma07g00980 . Cmo06g00856 Cmo16g01141 Cma02g01583 . Car02g01346 . Sed01g4069 Cpe14g00902 Cpe05g00208 Bhi11g00101 Tan01g2125 Cmetu06g1180 Lac11g2359 Hepe06g1729 Mch10g1614 . Cla10g00197 Cam10g0203 Cec10g0208 Cco10g0208 Clacu10g0205 Cmu10g1048 Cre10g0456 Cone8ag0444 Cone12ag0605 Cone6ag0623 . Lsi07g01237 . Chy04g00042 Cme06g02508 Blo03g00823 Blo19g00261 Bda07g00844 . Bpe08g00864 Bpe11g00356 Bma05g00399 Bma12g00679 . Cmo02g01625 . Cma06g00833 Cma16g01091 . Car16g01033 . . . . . . . . . Cla09g01186 Cam09g1250 Cec09g1266 Cco09g1300 . . Cre09g1214 . Csa03g04659 Chy06g02109 Cme04g00054
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000944 6 2 3 4 5 2 4 2 2 2 2 2 4 2 2 4 2 3 4 2 2 2 2 2 2 2 2 5 5 1 84