Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag0626 ATGAAGTGCTTCTTCTTTGGATTCAAGGCGAAAAGAAGAGCGGAGTCGGCTCCGATTTTAACAACCAGTAATAGTAATAACATATCATCATCAGGCTCAGGACCTTCTCCAAGAGGAATACCAGAATTGTACAGAGAGAGGGAAAATAGTCTAAAAGTTTTCTCTTTACAAGAGCTCATAGATGCAACCGATGGTCTGAGCAGATTTTCAATGATAGGGGAAGGTGGTTTTGGAACCGTGTATAAGGGAGCTGTTAGGCTTCATGATGATGGTGGTCTAGCCGATTCAACTCTTGTTGCCATAAAAAGGCTTAAACCTGATAGCTTACAGGGTCACAAAGAATGGCTGGCAGAAGTTCAATTTTTGGGTGTAGTAAGTCACCCAAGTCTAGTAAAGCTTTTAGGATATTGTTCTGAGGATGGAGAGAGAGGAATGCAACGGCTACTAGTATACGAGTATATGCCAAATGGAAGCCTGGAAAATCATCTTTTCGGCAAGGCTCTCCCCCCTCTGTCTTGGAAGAAAAGATTACAGATTATATTAGGTGCTGCTCAAGGATTGGCTTATCTACATGGAGGATTAGAAATCCAGGTAATATATCGGGATTTTAAATCCTCGAATGTGCTCTTGGATGCGGATTTTATGGCTAAGCTTTCGGATTTTGGGCTTGTTAGAGAGGGACCCACCGGTGATCGTACTCATGTTTCAACTGCAGTGGTGGGGACGTATGGATACGCTGCGCCAGAATATTTACAGACGGGCCATCTCAAGAGCTATAGTGATATATGGAGTTTTGGTGTGGTGCTCTATGAGATTCTAACGGGAAGGCGGGCATTGGATAGAAACCGCCCGAAAACAGAGCAGAAACTGTTAGATTGGGTGAAACTGTACCCAGTAGATAGTAGAAGGTTTAGGATGATAATGGATCAGAAGCTTGGAAACCAATATTCTCCAACTGCAGCTCGGGCAGTTGCCAGGCTGGCAGATAGGTGTCTGAGCAAGAATGAAAAGGATCGGCCGGCAATGAGTGAGGTGGTAGAATGTTTGAAGAAAGCATTAAGAGATTCGGAAGAGAAAAACGACTCCTGA 1089 43.89 MKCFFFGFKAKRRAESAPILTTSNSNNISSSGSGPSPRGIPELYRERENSLKVFSLQELIDATDGLSRFSMIGEGGFGTVYKGAVRLHDDGGLADSTLVAIKRLKPDSLQGHKEWLAEVQFLGVVSHPSLVKLLGYCSEDGERGMQRLLVYEYMPNGSLENHLFGKALPPLSWKKRLQIILGAAQGLAYLHGGLEIQVIYRDFKSSNVLLDADFMAKLSDFGLVREGPTGDRTHVSTAVVGTYGYAAPEYLQTGHLKSYSDIWSFGVVLYEILTGRRALDRNRPKTEQKLLDWVKLYPVDSRRFRMIMDQKLGNQYSPTAARAVARLADRCLSKNEKDRPAMSEVVECLKKALRDSEEKNDS 362
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3169346 3171559 - Conep06aG0064500.1 Cone6ag0626 439510

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag0626 362 MobiDBLite consensus disorder prediction 21 36 - -
Cone6ag0626 362 CDD STKc_IRAK 72 351 - -
Cone6ag0626 362 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 154 362 - -
Cone6ag0626 362 Pfam Protein tyrosine and serine/threonine kinase 70 349 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone6ag0626 362 Gene3D Phosphorylase Kinase; domain 1 42 153 - -
Cone6ag0626 362 ProSitePatterns Protein kinases ATP-binding region signature. 72 102 IPR017441 GO:0005524(InterPro)
Cone6ag0626 362 SUPERFAMILY Protein kinase-like (PK-like) 48 349 IPR011009 -
Cone6ag0626 362 MobiDBLite consensus disorder prediction 21 40 - -
Cone6ag0626 362 PANTHER OS01G0588500 PROTEIN-RELATED 46 352 IPR050823 -
Cone6ag0626 362 Gene3D Transferase(Phosphotransferase) domain 1 154 362 - -
Cone6ag0626 362 ProSitePatterns Serine/Threonine protein kinases active-site signature. 198 210 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone6ag0626 362 PIRSF TyrPK_CSF1-R 152 362 - -
Cone6ag0626 362 PIRSF TyrPK_CSF1-R 64 168 - -
Cone6ag0626 362 ProSiteProfiles Protein kinase domain profile. 66 353 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag0626 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone6ag0626 Cone-Chr6:3169346 Cone7ag0427 Cone-Chr7:1899056 1.22E-148 dispersed
Cone12ag0425 Cone-Chr12:2521804 Cone6ag0626 Cone-Chr6:3169346 5.00E-173 wgd
Cone16ag0870 Cone-Chr16:9177028 Cone6ag0626 Cone-Chr6:3169346 7.65E-108 wgd
Cone19ag0973 Cone-Chr19:7376643 Cone6ag0626 Cone-Chr6:3169346 1.08E-103 wgd
Cone6ag0626 Cone-Chr6:3169346 Cone8ag0440 Cone-Chr8:2761272 5.08E-175 wgd
Cone6ag0626 Cone-Chr6:3169346 Cone9ag0627 Cone-Chr9:2988239 3.75E-245 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g575 . . Bda06g01304 . . . . . Cmo06g00851 . Cma02g01580 . Car02g01344 . . . Cpe05g00210 Bhi11g00096 . . . . Mch10g1609 . Cla10g00201 . . . . . . Cone8ag0440 Cone12ag0425 Cone6ag0626 Cone9ag0627 Lsi07g01242 . Chy04g00037 Cme06g02513 Blo03g00818 . Bda07g00128 Bda09g00691 Bpe08g00866 Bpe11g00359 . . . Cmo02g01622 Cmo19g00393 Cma06g00828 Cma16g01095 . Car16g01036 Cpe08g00701 . Bhi05g00563 . . . . . Lcy12g1885 Cla09g01197 . . . . . . . Csa03g04665 Chy06g02104 Cme04g00046
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82923 PF03105 SPX 4.30E-61 No_clan Cone PK