Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag0628 ATGATCCATAGACCGTCTTCCTTTCCTCCTCACTCTCCTTCCCTCTCCTCACTTCGCGCCTACAGCTATCTTTCTCCTTCTTCTTCACCGTCCTTTTTCATGTGCTTTAATACTTCCTTTCCTTCTCTGTCCGACCTCCTCCGCCATTTCCGCCATACCCACTTGCTCAAACTCCTCTTCCGCTCCCTCCTCCTCCTCGCCCTACCTTCCCTCTACCTCATCTTCTCCTCCTCCTCCACTCCTGGCTCCTCTTCCTCTGTCCTCAACCTCCTCTCTCTCCTCTCCTTCTCCCTCGCACTTCTTCTCTCCCTGACCACCGCCCTCCCTCGCTTCCCCTCCATCCGCTTCCTTCTCTCCCGCCCTTTCTCACCTCCTCCTCCCCCTTCCCAACCCGTTCTCTGGTCAATTGGGTCAAACCCCAAATCAGAAAAGAGTCTAAATTCCGGCTCATGGGTCAAACTCTACAGTAATGGAGATGTATTCGAGGGGGAATTCCACAAGGGGAAGTGTTCAGGAAGTGGGGTCTATTACTATCAGAGGAGTGGGAGATACGAAGGTGATTGGATTGATGGAAAGCATGATGGATATGGGGTCGAAACATGGGCGAAAGGGAGTCGGTACAGAGGGCAGTATCGGAAAGGATTGAGGCATGGGATTGGGGTCTATAGATTCTTTAGTGGTGATACTTATGCTGGTGAGTGGTCTAATGGTCAGTTTCATGGATTTGGAGTTCATACTTGCGAGGATGGTAGTAAGTACGTTGGAGAGTTCAAATGGGGCCTTAAACATGGCCCTGGTCTATACCACTTCAGAAATGGGGATACATATGCCGGGGAATATTTTGCCGATAAGATGCATGGATTTGGTGTTTACCGGTTTGGAAACGGACATAAATTTGAAGGAGCTTGGCATGAAGGAAGACGACAAGGCCTTGGTACATACACTTTCAGAAACGGAGAGGCCCAGTCCGGTCATTGGCAAAACGGGCTTCTCGATATTCCTATTCCACAGATTAGTAATAATACCCATCAGCCCCAATCTTCTTATTCCATCTCCCACACCAAAGTCCTTAATGTAGTACAGGAAGCAAGACGAGCTGCAGAGAAAGCTTATGAGATAGGAAGAATTGATGATGGAAGGGTGAACAAAGTAGTATCTTCGGCTAATAGAGCAGCAAATGCAGCTAGAGTTGCAGCCATTAAGGCTGTCCAAAACAGACTGCATTGGAATAATGAGGATGTCTGA 1245 48.67 MIHRPSSFPPHSPSLSSLRAYSYLSPSSSPSFFMCFNTSFPSLSDLLRHFRHTHLLKLLFRSLLLLALPSLYLIFSSSSTPGSSSSVLNLLSLLSFSLALLLSLTTALPRFPSIRFLLSRPFSPPPPPSQPVLWSIGSNPKSEKSLNSGSWVKLYSNGDVFEGEFHKGKCSGSGVYYYQRSGRYEGDWIDGKHDGYGVETWAKGSRYRGQYRKGLRHGIGVYRFFSGDTYAGEWSNGQFHGFGVHTCEDGSKYVGEFKWGLKHGPGLYHFRNGDTYAGEYFADKMHGFGVYRFGNGHKFEGAWHEGRRQGLGTYTFRNGEAQSGHWQNGLLDIPIPQISNNTHQPQSSYSISHTKVLNVVQEARRAAEKAYEIGRIDDGRVNKVVSSANRAANAARVAAIKAVQNRLHWNNEDV 414
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3174802 3177022 - Conep06aG0064700.1 Cone6ag0628 439512

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag0628 414 SMART morn 182 203 IPR003409 -
Cone6ag0628 414 SMART morn 205 226 IPR003409 -
Cone6ag0628 414 SMART morn 251 272 IPR003409 -
Cone6ag0628 414 SMART morn 297 318 IPR003409 -
Cone6ag0628 414 SMART morn 228 249 IPR003409 -
Cone6ag0628 414 SMART morn 274 295 IPR003409 -
Cone6ag0628 414 SMART morn 159 180 IPR003409 -
Cone6ag0628 414 FunFam Phosphatidylinositol 4-phosphate 5-kinase 8 236 281 - -
Cone6ag0628 414 SUPERFAMILY Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain 225 329 - -
Cone6ag0628 414 FunFam Phosphatidylinositol 4-phosphate 5-kinase 8 190 235 - -
Cone6ag0628 414 Pfam MORN repeat 161 179 IPR003409 -
Cone6ag0628 414 Pfam MORN repeat 184 206 IPR003409 -
Cone6ag0628 414 Pfam MORN repeat 299 319 IPR003409 -
Cone6ag0628 414 Pfam MORN repeat 230 251 IPR003409 -
Cone6ag0628 414 Pfam MORN repeat 207 229 IPR003409 -
Cone6ag0628 414 Pfam MORN repeat 253 275 IPR003409 -
Cone6ag0628 414 Pfam MORN repeat 276 297 IPR003409 -
Cone6ag0628 414 Gene3D - 236 282 - -
Cone6ag0628 414 Gene3D - 283 356 - -
Cone6ag0628 414 Gene3D - 191 235 - -
Cone6ag0628 414 Gene3D - 143 190 - -
Cone6ag0628 414 SUPERFAMILY Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain 149 250 - -
Cone6ag0628 414 PANTHER PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE RELATED 143 406 - -
Cone6ag0628 414 FunFam Phosphatidylinositol 4-phosphate 5-kinase 8 146 189 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag0628 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone6ag0628 Cone-Chr6:3174802 Cone7ag0420 Cone-Chr7:1864830 5.66E-24 dispersed
Cone9ag0631 Cone-Chr9:2996991 Cone6ag0628 Cone-Chr6:3174802 3.94E-82 transposed
Cone15ag0275 Cone-Chr15:1281655 Cone6ag0628 Cone-Chr6:3174802 4.32E-35 wgd
Cone6ag0628 Cone-Chr6:3174802 Cone9ag0630 Cone-Chr9:2996608 3.51E-26 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g571 . Blo03g00134 Bda06g01305 . . Bpe07g00201 . . Cmo06g00849 Cmo16g01146 . . . . Sed05g2359 Cpe14g00907 . Bhi11g00093 Tan01g2116 Cmetu06g0894 . Hepe06g1074 Mch10g1606 . Cla10g00203 Cam10g0209 Cec10g0214 Cco10g0215 Clacu10g0212 Cmu10g1055 Cre10g0463 . . Cone6ag0628 Cone9ag0631 Lsi07g01244 . . Cme06g02515 . . . . . . . Bma12g00195 . . Cmo19g00513 Cma06g00826 Cma16g01097 . Car16g01039 . . . . . . . . . . . . . . . . . Csa03g00218 Chy06g02102 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0029865 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1