Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag0633 ATGGGATATTTTCTCTTTTGTGTGTTGCTTCTCCTCCCTGCATTGTCTAACTCTCAGGACACCTTCACTTGCTCTAGAGCAACTTATTATGGTAGCCCTGATTGTTATGGCACTCCAACGGGAGCATGTGGCTTTGGTGAATTTGGAAGGACCATCAATGACGGCAGCGTGTCGGCTGTTGCTCAGCTTTATAAGAATGGCAGTGGTTGTGGTGCATGCTATCAGGTGAGGTGCAAAATACCACAACATTGCACTGAAGAGGGTGTGAACTTGGTGGTGACGGACCATGGCGAAGGAGACCACACGGATTTCATCCTCAGCCCACGAGCCTATGCGAAATTAGCTCTTCCAAATGCGGCGTTACAGTTGTTCTCATACGGAGTCGTAGACATAGAATACAGAAGGATCTCATGTCGATACTCAACCTCCAACCTGAAGTTCAAGGTCCATGAGCATAGCAAATTTCCCGACTACATTGCTATTCTCATCTTATACATCGCCGGCCAAAACGACATCACAGCTGTCGAATTGTGGCAGGAGGATTGCAAGGAATGGACGGGAATGAGAAGGGCATATGGTGCAGTTTGGGACATGGCTAGCCCTCCAAGAGGGGCCATTAACTTGAGGTTCCAAGTGAGTAGCAGTGCAGGACTAACGTGGGCTCAAGCACCCAATGTGATACCTAGTGATTGGAAGGCAGGGGCCACTTACGACTCAAGCATTCAGCTCACTTAA 735 48.57 MGYFLFCVLLLLPALSNSQDTFTCSRATYYGSPDCYGTPTGACGFGEFGRTINDGSVSAVAQLYKNGSGCGACYQVRCKIPQHCTEEGVNLVVTDHGEGDHTDFILSPRAYAKLALPNAALQLFSYGVVDIEYRRISCRYSTSNLKFKVHEHSKFPDYIAILILYIAGQNDITAVELWQEDCKEWTGMRRAYGAVWDMASPPRGAINLRFQVSSSAGLTWAQAPNVIPSDWKAGATYDSSIQLT 244
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3209250 3210325 + Conep06aG0065300.1 Cone6ag0633 439517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag0633 244 Pfam Lytic transglycolase 59 133 IPR009009 -
Cone6ag0633 244 CDD DPBB_EXLB_N 25 138 - -
Cone6ag0633 244 PANTHER EXPANSIN-B3 5 243 - -
Cone6ag0633 244 Pfam Expansin C-terminal domain 146 228 IPR007117 -
Cone6ag0633 244 SUPERFAMILY Barwin-like endoglucanases 8 141 IPR036908 -
Cone6ag0633 244 Gene3D - 13 139 IPR036908 -
Cone6ag0633 244 PRINTS Expansin/Lol pI family signature 60 78 IPR007118 GO:0005576(InterPro)
Cone6ag0633 244 PRINTS Expansin/Lol pI family signature 21 36 IPR007118 GO:0005576(InterPro)
Cone6ag0633 244 PRINTS Expansin/Lol pI family signature 126 142 IPR007118 GO:0005576(InterPro)
Cone6ag0633 244 PRINTS Expansin/Lol pI family signature 185 199 IPR007118 GO:0005576(InterPro)
Cone6ag0633 244 PRINTS Expansin/Lol pI family signature 225 239 IPR007118 GO:0005576(InterPro)
Cone6ag0633 244 SUPERFAMILY PHL pollen allergen 144 239 IPR036749 -
Cone6ag0633 244 Gene3D - 140 243 IPR036749 -
Cone6ag0633 244 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 40 143 IPR007112 -
Cone6ag0633 244 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 157 239 IPR007117 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0440 Cone-Chr12:2627841 Cone6ag0633 Cone-Chr6:3209250 3.38E-72 dispersed
Cone6ag0633 Cone-Chr6:3209250 Cone8ag1316 Cone-Chr8:10674331 1.57E-56 dispersed
Cone6ag0633 Cone-Chr6:3209250 Cone8ag0450 Cone-Chr8:2867253 1.50E-75 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag0633 - - - 0.0