Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag0635 ATGGGCAAGCAAGGGCCTTGCTATCACTGTGGAGCTACAAGCACACCCCTTTGGCGCAATGGGCCTCCAGATAAGCCAGTATTATGCAATGCTTGTGGGTCTAGATGGAGGACAAAGGGAACACTTGCCAACTATACTCCTCTCCACGCTAGATCAGACCCTGGTGATTTCGAAGACCACAGAGTTTCCAAAATGAAAAGTGCATCTATATACAAAAGGAAGGAAATTAAAAGAAAACGTCAGCATGAAAACAGGTTATTGGTCGGAGGGATCATCCCAACTGATCATAGTCAGAATTTCCACAAGACTGTAGATGAAGACACAAGTAATAGGTCAAGTTCCGGATCTGCCATTTCCAACTCGGAAAGCTGTGCCCAATTTGGTAGTGCTGATGCTAGTGATTTAACAGGTCCAGCTCAGTCAATGGTGTGGGATACAATGGTGCCATCAAGGAAGAGAACGTGTGTGAATCGGTCAAAGCCATCTTCTGTTGAGAAACTCACAAAAGATCTTTACACAATTTTACAAGAACAACAAGCTTCATATTTCTCGGGGTCTTCAGAAGAGGATCTTCTTTTAGAGAGTGAAGCACCAATGGTCTCTGTCGAGATTGGACATGGAAGTGTTCTTATTAGGCACCCAAGTTCTATAGCTCGGGAAGAGGAATCTGAAGTTAGCTCTCTTTCGATTGACAACAACAGACTCTACCCCATAAATGAGTCTTATTCTTATTCAGCCACTTTTCCTGTACATAGTGGAGTTGAAATTCAGAGTGGAAAGATGAAGAATCTTACTGGCCATGGGGTGCAACAAGAGCAATTTAAAAGGGACAAGTCACAACATGAAAAAGCTCTAGTCTTGGGAAATCATAACTCACCTCTGTGTAACATAGATCTAACTGATGTTCTTAACTTCGAAGAGTTTATGAGGCATTTGACTGATGAAGAACAGATACAATTGATGAAATATCTACCTCAAATCGATGCAGTTCAACTTCCTGGCAGCCTCAAATGCATGTTTGAGAATTTGCAATTCAAGGAAAACTTGACTTCCTTCCAGCAGTTGCTTGCTGAGGGGGTCTTAGATTTGTCCTTTCGAAATGCAAAATCTGAAGACTGCAAGACTTTGAAAAGGCTTGCTTTATGCAATCTGTCAAAATCCAAGTGGGTGGAACGGTATCATCTACTCAAGGAAAGTAAAAATAGCGGTGGGGCAGCTCTTGTTCCGGGAACTACTTCTGTCATGTCAAGTAATTTCATGAATGCCAAGAGATTATTCCATGACACCCAAAATAAAAATTTCTCAGATGTGAAGACTATGATGAAGAGTCCGAAAAGGGTGATGATGAAGGGTAGCTTGGAAAACAAGGAACAGATGGACTATGAAAGCTCTTGCTTTAGTCCAAGAAGCCTATTTGCTTTGCCTTCTGATGGAAACTCTCTGCTATTGGAATCTTTACAGTTTGTTGAAGAAAGTTCTGATCAGGATCTTGATGTTAGGTCAAACAACTCCTTCCCTCGAGCTGAGCTTCGTCTTCCAGCTAGCACAAGTAGTAGCTCTGTGTACCCAAATCTTGTTTATAACCAATTTTGTTGA 1596 41.73 MGKQGPCYHCGATSTPLWRNGPPDKPVLCNACGSRWRTKGTLANYTPLHARSDPGDFEDHRVSKMKSASIYKRKEIKRKRQHENRLLVGGIIPTDHSQNFHKTVDEDTSNRSSSGSAISNSESCAQFGSADASDLTGPAQSMVWDTMVPSRKRTCVNRSKPSSVEKLTKDLYTILQEQQASYFSGSSEEDLLLESEAPMVSVEIGHGSVLIRHPSSIAREEESEVSSLSIDNNRLYPINESYSYSATFPVHSGVEIQSGKMKNLTGHGVQQEQFKRDKSQHEKALVLGNHNSPLCNIDLTDVLNFEEFMRHLTDEEQIQLMKYLPQIDAVQLPGSLKCMFENLQFKENLTSFQQLLAEGVLDLSFRNAKSEDCKTLKRLALCNLSKSKWVERYHLLKESKNSGGAALVPGTTSVMSSNFMNAKRLFHDTQNKNFSDVKTMMKSPKRVMMKGSLENKEQMDYESSCFSPRSLFALPSDGNSLLLESLQFVEESSDQDLDVRSNNSFPRAELRLPASTSSSSVYPNLVYNQFC 531
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3216648 3220948 - Conep06aG0065500.1 Cone6ag0635 439519

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag0635 531 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 5 45 - -
Cone6ag0635 531 ProSiteProfiles DEUBAD (DEUBiquitinase ADaptor) domain profile. 290 402 IPR044867 -
Cone6ag0635 531 Pfam Asx homology domain 275 369 IPR028020 -
Cone6ag0635 531 MobiDBLite consensus disorder prediction 97 122 - -
Cone6ag0635 531 Pfam GATA zinc finger 7 41 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cone6ag0635 531 SMART GATA_3 1 53 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cone6ag0635 531 ProSiteProfiles GATA-type zinc finger domain profile. 7 40 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cone6ag0635 531 CDD ZnF_GATA 6 61 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cone6ag0635 531 Gene3D - 3 85 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
Cone6ag0635 531 PANTHER OSJNBB0038F03.10 PROTEIN 1 364 IPR044589 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag0635 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0412 Cone-Chr12:2429606 Cone6ag0635 Cone-Chr6:3216648 4.04E-191 wgd
Cone6ag0635 Cone-Chr6:3216648 Cone9ag0640 Cone-Chr9:3054672 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone17ag1134 . 87 384 C2C2-Gata Transcription Factor Family AT5G25830 50.8 5.8e-68 255.4
Cone20ag0589 . 24 318 C2C2-Gata Transcription Factor Family AT5G25830 51.9 7.6e-68 255.0
Cone14ag0515 . 1 241 C2C2-Gata Transcription Factor Family AT2G45050 54.3 8.5e-46 181.4
Cone15ag0541 . 1 237 C2C2-Gata Transcription Factor Family AT3G60530 50.2 3.2e-52 202.6
Cone14ag0515 . 1 237 C2C2-Gata Transcription Factor Family AT3G60530 53.6 2.8e-48 189.5
Cone6ag0635 . 1 510 C2C2-Gata Transcription Factor Family AT4G17570 54.3 4.7e-133 472.2
Cone9ag0640 . 1 526 C2C2-Gata Transcription Factor Family AT4G17570 52.6 1.0e-132 471.1
Cone12ag0412 . 1 482 C2C2-Gata Transcription Factor Family AT4G17570 51.1 1.7e-119 427.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001256 2 2 1 2 3 2 5 2 2 2 2 2 4 2 1 4 2 3 4 2 2 2 2 2 2 2 2 7 3 1 74
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46311 PF01066 CDP-OH_P_transf 5.20E-17 No_clan Cone TF