Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag0635 ATGGGCAAGCAAGGGCCTTGCTATCACTGTGGAGCTACAAGCACACCCCTTTGGCGCAATGGGCCTCCAGATAAGCCAGTATTATGCAATGCTTGTGGGTCTAGATGGAGGACAAAGGGAACACTTGCCAACTATACTCCTCTCCACGCTAGATCAGACCCTGGTGATTTCGAAGACCACAGAGTTTCCAAAATGAAAAGTGCATCTATATACAAAAGGAAGGAAATTAAAAGAAAACGTCAGCATGAAAACAGGTTATTGGTCGGAGGGATCATCCCAACTGATCATAGTCAGAATTTCCACAAGACTGTAGATGAAGACACAAGTAATAGGTCAAGTTCCGGATCTGCCATTTCCAACTCGGAAAGCTGTGCCCAATTTGGTAGTGCTGATGCTAGTGATTTAACAGGTCCAGCTCAGTCAATGGTGTGGGATACAATGGTGCCATCAAGGAAGAGAACGTGTGTGAATCGGTCAAAGCCATCTTCTGTTGAGAAACTCACAAAAGATCTTTACACAATTTTACAAGAACAACAAGCTTCATATTTCTCGGGGTCTTCAGAAGAGGATCTTCTTTTAGAGAGTGAAGCACCAATGGTCTCTGTCGAGATTGGACATGGAAGTGTTCTTATTAGGCACCCAAGTTCTATAGCTCGGGAAGAGGAATCTGAAGTTAGCTCTCTTTCGATTGACAACAACAGACTCTACCCCATAAATGAGTCTTATTCTTATTCAGCCACTTTTCCTGTACATAGTGGAGTTGAAATTCAGAGTGGAAAGATGAAGAATCTTACTGGCCATGGGGTGCAACAAGAGCAATTTAAAAGGGACAAGTCACAACATGAAAAAGCTCTAGTCTTGGGAAATCATAACTCACCTCTGTGTAACATAGATCTAACTGATGTTCTTAACTTCGAAGAGTTTATGAGGCATTTGACTGATGAAGAACAGATACAATTGATGAAATATCTACCTCAAATCGATGCAGTTCAACTTCCTGGCAGCCTCAAATGCATGTTTGAGAATTTGCAATTCAAGGAAAACTTGACTTCCTTCCAGCAGTTGCTTGCTGAGGGGGTCTTAGATTTGTCCTTTCGAAATGCAAAATCTGAAGACTGCAAGACTTTGAAAAGGCTTGCTTTATGCAATCTGTCAAAATCCAAGTGGGTGGAACGGTATCATCTACTCAAGGAAAGTAAAAATAGCGGTGGGGCAGCTCTTGTTCCGGGAACTACTTCTGTCATGTCAAGTAATTTCATGAATGCCAAGAGATTATTCCATGACACCCAAAATAAAAATTTCTCAGATGTGAAGACTATGATGAAGAGTCCGAAAAGGGTGATGATGAAGGGTAGCTTGGAAAACAAGGAACAGATGGACTATGAAAGCTCTTGCTTTAGTCCAAGAAGCCTATTTGCTTTGCCTTCTGATGGAAACTCTCTGCTATTGGAATCTTTACAGTTTGTTGAAGAAAGTTCTGATCAGGATCTTGATGTTAGGTCAAACAACTCCTTCCCTCGAGCTGAGCTTCGTCTTCCAGCTAGCACAAGTAGTAGCTCTGTGTACCCAAATCTTGTTTATAACCAATTTTGTTGA 1596 41.73 MGKQGPCYHCGATSTPLWRNGPPDKPVLCNACGSRWRTKGTLANYTPLHARSDPGDFEDHRVSKMKSASIYKRKEIKRKRQHENRLLVGGIIPTDHSQNFHKTVDEDTSNRSSSGSAISNSESCAQFGSADASDLTGPAQSMVWDTMVPSRKRTCVNRSKPSSVEKLTKDLYTILQEQQASYFSGSSEEDLLLESEAPMVSVEIGHGSVLIRHPSSIAREEESEVSSLSIDNNRLYPINESYSYSATFPVHSGVEIQSGKMKNLTGHGVQQEQFKRDKSQHEKALVLGNHNSPLCNIDLTDVLNFEEFMRHLTDEEQIQLMKYLPQIDAVQLPGSLKCMFENLQFKENLTSFQQLLAEGVLDLSFRNAKSEDCKTLKRLALCNLSKSKWVERYHLLKESKNSGGAALVPGTTSVMSSNFMNAKRLFHDTQNKNFSDVKTMMKSPKRVMMKGSLENKEQMDYESSCFSPRSLFALPSDGNSLLLESLQFVEESSDQDLDVRSNNSFPRAELRLPASTSSSSVYPNLVYNQFC 531
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3216648 3220948 - Conep06aG0065500.1 Cone6ag0635 439519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag0635 531 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 5 45 - -
Cone6ag0635 531 ProSiteProfiles DEUBAD (DEUBiquitinase ADaptor) domain profile. 290 402 IPR044867 -
Cone6ag0635 531 Pfam Asx homology domain 275 369 IPR028020 -
Cone6ag0635 531 MobiDBLite consensus disorder prediction 97 122 - -
Cone6ag0635 531 Pfam GATA zinc finger 7 41 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cone6ag0635 531 SMART GATA_3 1 53 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cone6ag0635 531 ProSiteProfiles GATA-type zinc finger domain profile. 7 40 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cone6ag0635 531 CDD ZnF_GATA 6 61 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cone6ag0635 531 Gene3D - 3 85 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
Cone6ag0635 531 PANTHER OSJNBB0038F03.10 PROTEIN 1 364 IPR044589 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0412 Cone-Chr12:2429606 Cone6ag0635 Cone-Chr6:3216648 4.04E-191 wgd
Cone6ag0635 Cone-Chr6:3216648 Cone9ag0640 Cone-Chr9:3054672 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46311 PF01066 CDP-OH_P_transf 5.20E-17 No_clan Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag0635 - - - 0.0