Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag0649 ATGTTTGGTCAGATTTGCAATACAACAGAGTCAGATTTGGCTCTGTGGGAATCCATTCGCCGCCAATTACTTGGCGAATCAGAAATTGTTTCGGGAAAATCTCCGATTTTCTGTAGAAGCTCTAGTTTCAGTAGCTTATACCCATTCTTGACTGAAACTTGGGGTGCTTTACCTCTTAAAGAAGATGACTCAGAGGATATGGTTCTAGCCGGAGTGCTTAGAGATGCCGTAAGCGTTGGGTGGGTCCCATCACTTGATTCAAGCACGGGGGAAACATTGAGTTTCGGATTTCCCGTTGTGAAGTCGGAGCCAGAAATTCTCCCTCCGGTAAATCATCGTTTTCCGGAGTATAAGGAATCAGCACCGGTTCCGAGGGTGGTTTCTGCTCCAGCGGTTGTTCCGGTAAAGGGGAAGCATTACAGAGGTGTACGGCAGCGGCCGTGGGGAAAGTACGCAGCAGAGATACGGGACCCGGCAAAGAACGGGGCCAGAGTATGGCTGGGAACTTTCGAGACGGCAGAAGATGCAGCTCTGGCTTATGACCGGGCTGCTTATAGGATGCGCGGCTCGAGGGCTCTCCTTAACTTTCCACTCCGGGTAAATTCAGGCGAACCGGACCCGGTTCGAGTAACATCAAAGCGGGCCTCGCCAAGGTCATCGCCGGAGCATTCTGAGTTATATTCAGCACAAAGCGGGTCACCTAAGAGGCGGAAGAAAGCTCATGGAGCTGCTCGGGAGGTGGTGGGTCAACCCGGTTTGGAAATATCCAAAGGACTGAATGTGATAGTGGCATCGTGCACACATGGCAACGAGTTATTGGTTAGCTAA 828 51.09 MFGQICNTTESDLALWESIRRQLLGESEIVSGKSPIFCRSSSFSSLYPFLTETWGALPLKEDDSEDMVLAGVLRDAVSVGWVPSLDSSTGETLSFGFPVVKSEPEILPPVNHRFPEYKESAPVPRVVSAPAVVPVKGKHYRGVRQRPWGKYAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAYRMRGSRALLNFPLRVNSGEPDPVRVTSKRASPRSSPEHSELYSAQSGSPKRRKKAHGAAREVVGQPGLEISKGLNVIVASCTHGNELLVS 275
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3279735 3280809 - Conep06aG0067100.1 Cone6ag0649 439533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag0649 275 ProSiteProfiles AP2/ERF domain profile. 139 197 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone6ag0649 275 FunFam Ethylene-responsive transcription factor 2 138 198 - -
Cone6ag0649 275 MobiDBLite consensus disorder prediction 204 246 - -
Cone6ag0649 275 MobiDBLite consensus disorder prediction 213 231 - -
Cone6ag0649 275 PRINTS Ethylene responsive element binding protein signature 140 151 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone6ag0649 275 PRINTS Ethylene responsive element binding protein signature 163 179 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone6ag0649 275 Pfam AP2 domain 139 190 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone6ag0649 275 SUPERFAMILY DNA-binding domain 139 199 IPR016177 GO:0003677(InterPro)
Cone6ag0649 275 Gene3D AP2/ERF domain 138 200 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone6ag0649 275 SMART rav1_2 139 203 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone6ag0649 275 PANTHER DNA-BINDING DOMAIN 116 231 IPR044808 GO:0003700(InterPro)|GO:0009873(InterPro)
Cone6ag0649 275 CDD AP2 138 197 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone5ag0766 Cone-Chr5:3283128 Cone6ag0649 Cone-Chr6:3279735 5.53E-54 dispersed
Cone6ag0649 Cone-Chr6:3279735 Cone9ag0983 Cone-Chr9:5033048 6.02E-31 dispersed
Cone9ag1000 Cone-Chr9:5176381 Cone6ag0649 Cone-Chr6:3279735 6.46E-21 dispersed
Cone6ag0649 Cone-Chr6:3279735 Cone6ag0650 Cone-Chr6:3287997 1.59E-29 tandem
Cone12ag0404 Cone-Chr12:2370752 Cone6ag0649 Cone-Chr6:3279735 1.07E-30 wgd
Cone14ag0493 Cone-Chr14:2425752 Cone6ag0649 Cone-Chr6:3279735 5.72E-31 wgd
Cone15ag0522 Cone-Chr15:2553295 Cone6ag0649 Cone-Chr6:3279735 4.50E-29 wgd
Cone15ag0246 Cone-Chr15:1160793 Cone6ag0649 Cone-Chr6:3279735 1.16E-18 wgd
Cone6ag0649 Cone-Chr6:3279735 Cone8ag0420 Cone-Chr8:2610186 2.85E-29 wgd
Cone6ag0649 Cone-Chr6:3279735 Cone9ag0653 Cone-Chr9:3110330 3.06E-170 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46312 PF00010 HLH 3.30E-06 No_clan Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag0649 K09286 - csv:101203663 316.235