Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag0654 ATGACGGTTGAGAAAGAAGATCTTGGTTTGAGTCTGAGCTTGAATAATTTTGCTCAGAATCATGATCATAGTTCTAATAATCATAATAATACTATGAATTTCCAGCTGAATCTCATGCCTTCTTCTCCTTCTCCCGGCTTCAACAACTTCCAGAAACCACCTCACTGGAACGACCCCTTCCTTTCTACAGACCGAAACTCCGAAACGTACCGGACCGAAACGCAACCGTTCATCCGAGTCAGAGGCATCGACGTTAACAGTTTGCCATCGACGGCCGACTGTGAAGAGGAAAACGGCGTTTCGAGCCCTAACAGTACGGTTTCGAGTGTGAGCGGGAAGCGTAACAGTCATGAGAGAGATGCCAACGGAGAAGATCGCGATCTGGATCGGGATTGCTCTCGTGGGATCAGCGACGAAGAAGACGGCGATACCTCCAGAAAGAAGCTCAGACTCTCTAAAGACCAATCGGCTATTCTGGAGGAGAGCTTCAAAGAGCACAACACTCTTAATCCGAAGCAAAAGCTGGCGTTGGCGAAGCAATTGAGCCTCCGGCCCAGACAAGTAGAAGTCTGGTTTCAGAACAGAAGAGCAAGGACCAAGTTGAAGCAAACGGAAGTTGACTGCGAATTCTTGAAGCGGTGCTGTGAGAATTTGACGGAGGAGAATAGGCGGTTGCAGAAGGAAGTACAGGAGCTGAGAGCACTGAAGCTTTCCCCGCATCTGTACATGCAAATGACCCCACCTACAACACTCACCATGTGCCCATCATGTGAGCGAGTAGGGGTCCCACCCTCCGCACCATCATCGGCCATGCTGCATCGGGCCCATCAGCATCAGACTGGCCCAGCCCACTCAAGACCCATTACCATCAACCCGTGGGCCTCTGCCACTCCCATTCCTCACAGGCCGTTCGATGCGATTCACCGAGGAGGGGCGTGA 939 51.33 MTVEKEDLGLSLSLNNFAQNHDHSSNNHNNTMNFQLNLMPSSPSPGFNNFQKPPHWNDPFLSTDRNSETYRTETQPFIRVRGIDVNSLPSTADCEEENGVSSPNSTVSSVSGKRNSHERDANGEDRDLDRDCSRGISDEEDGDTSRKKLRLSKDQSAILEESFKEHNTLNPKQKLALAKQLSLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQKEVQELRALKLSPHLYMQMTPPTTLTMCPSCERVGVPPSAPSSAMLHRAHQHQTGPAHSRPITINPWASATPIPHRPFDAIHRGGA 312
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3299663 3301406 - Conep06aG0067600.1 Cone6ag0654 439538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag0654 312 MobiDBLite consensus disorder prediction 91 112 - -
Cone6ag0654 312 Gene3D - 150 200 - -
Cone6ag0654 312 ProSitePatterns 'Homeobox' domain signature. 177 200 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Cone6ag0654 312 FunFam Homeobox-leucine zipper protein 18 131 207 - -
Cone6ag0654 312 MobiDBLite consensus disorder prediction 275 312 - -
Cone6ag0654 312 Coils Coil 201 238 - -
Cone6ag0654 312 MobiDBLite consensus disorder prediction 113 149 - -
Cone6ag0654 312 Pfam Homeodomain 146 200 IPR001356 GO:0003677(InterPro)
Cone6ag0654 312 SUPERFAMILY Homeodomain-like 136 203 IPR009057 -
Cone6ag0654 312 MobiDBLite consensus disorder prediction 89 149 - -
Cone6ag0654 312 CDD homeodomain 146 203 IPR001356 GO:0003677(InterPro)
Cone6ag0654 312 CDD bZIP 195 234 - -
Cone6ag0654 312 Pfam HD-ZIP protein N terminus 3 117 IPR006712 GO:0005634(InterPro)
Cone6ag0654 312 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 1 277 IPR050762 -
Cone6ag0654 312 ProSiteProfiles 'Homeobox' domain profile. 142 202 IPR001356 GO:0003677(InterPro)
Cone6ag0654 312 SMART halz 202 245 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Cone6ag0654 312 SMART HOX_1 144 206 IPR001356 GO:0003677(InterPro)
Cone6ag0654 312 Pfam Homeobox associated leucine zipper 202 236 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone18ag0952 Cone-Chr18:6943238 Cone6ag0654 Cone-Chr6:3299663 2.01E-73 dispersed
Cone6ag0654 Cone-Chr6:3299663 Cone9ag1406 Cone-Chr9:10475756 8.88E-54 dispersed
Cone11ag0552 Cone-Chr11:3091504 Cone6ag0654 Cone-Chr6:3299663 6.13E-78 wgd
Cone6ag0654 Cone-Chr6:3299663 Cone9ag0657 Cone-Chr9:3125555 3.90E-163 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46314 PF00305 Lipoxygenase 1.70E-18 No_clan Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag0654 K09338 - vvi:100246436 411.764