Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag0672 ATGAGCACGGGGGAGCTTCTCAGCGTCGAACCATTGGAGCTCAAGTTTCCATTTGATTTGAAGAAGCAGATCTCTTGCTCCCTTCAATTGTCAAATAAGACAGATGATTACATTGCCTTCAAGGTGAAAACTACAAATCCGAAAAAGTATTGTGTTCGCCCAAACTCCGGAATTGTCCTGCCTCTGGCCTCATGCGATGTTATAGTAACCATGCAAGCACAAACTGAGGCTCCTCCTGATATGCAATGTAAGGACAAGTTCCTGCTTCAGAGTGTGAAAACAAATGGTGGTGCAACCACTAAGGATATCACTACAGAAATGTTCAATAAGGAAGCAGGACATGTGGTTGAGGAGTGCAAATTGAGAGTGGTTTATGTTTCTCCACCTCAACTGCCTTCCCCAGTTGCTGAAGGGTCGGAAGAAGGGTCCTCACCTAGAGGTCATGCTTTTGAGAACGGAAATGTGAATGGTTCTGAGTTTTCAAATGCGAAACCATTTTCTGAACTGCTTCCACCTCAAGAAATATCACCAGAGGCAAGAGCTCTTATTGCGAAACTGACTGAGGAGAAGAAAAATGCCATTCAACTGAACAACAAGATTCGTCAAGAATTGGACCTCTTGAGGCGTGAAAGCATGAAAAGGAATGGTGGTATCTCCTTCATGTTGGTCGTCTTCATTGGCTTGATCGGCCTTCTTTTGGGCTATATTATGAAGAGAACTTAG 723 43.85 MSTGELLSVEPLELKFPFDLKKQISCSLQLSNKTDDYIAFKVKTTNPKKYCVRPNSGIVLPLASCDVIVTMQAQTEAPPDMQCKDKFLLQSVKTNGGATTKDITTEMFNKEAGHVVEECKLRVVYVSPPQLPSPVAEGSEEGSSPRGHAFENGNVNGSEFSNAKPFSELLPPQEISPEARALIAKLTEEKKNAIQLNNKIRQELDLLRRESMKRNGGISFMLVVFIGLIGLLLGYIMKRT 240
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3417960 3419944 + Conep06aG0069400.1 Cone6ag0672 439556

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag0672 240 ProSiteProfiles Major sperm protein (MSP) domain profile. 6 126 IPR000535 -
Cone6ag0672 240 PANTHER VESICLE-ASSOCIATED MEMBRANE PROTEIN-ASSOCIATED PROTEIN 6 237 IPR016763 GO:0005789(InterPro)|GO:0005789(PANTHER)|GO:0005886(PANTHER)|GO:0061817(PANTHER)|GO:0090158(PANTHER)
Cone6ag0672 240 Pfam MSP (Major sperm protein) domain 7 110 IPR000535 -
Cone6ag0672 240 PIRSF VAMP_assoc_prot 1 239 IPR016763 GO:0005789(InterPro)
Cone6ag0672 240 Coils Coil 179 210 - -
Cone6ag0672 240 Gene3D Immunoglobulins 2 130 IPR013783 -
Cone6ag0672 240 FunFam Vesicle-associated protein 1-1 1 129 - -
Cone6ag0672 240 MobiDBLite consensus disorder prediction 149 163 - -
Cone6ag0672 240 SUPERFAMILY PapD-like 2 141 IPR008962 -
Cone6ag0672 240 MobiDBLite consensus disorder prediction 132 171 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag0672 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone6ag0672 Cone-Chr6:3417960 Cone9ag0641 Cone-Chr9:3064867 2.29E-41 dispersed
Cone11ag0584 Cone-Chr11:3410799 Cone6ag0672 Cone-Chr6:3417960 4.20E-98 wgd
Cone12ag0381 Cone-Chr12:2190303 Cone6ag0672 Cone-Chr6:3417960 3.00E-115 wgd
Cone14ag0521 Cone-Chr14:2610947 Cone6ag0672 Cone-Chr6:3417960 5.13E-108 wgd
Cone15ag0548 Cone-Chr15:2732394 Cone6ag0672 Cone-Chr6:3417960 1.79E-108 wgd
Cone6ag0672 Cone-Chr6:3417960 Cone8ag0396 Cone-Chr8:2438851 3.90E-118 wgd
Cone6ag0672 Cone-Chr6:3417960 Cone9ag0680 Cone-Chr9:3240583 1.35E-151 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g535 Blo02g01043 Blo03g00160 Bda06g00028 Bda08g00578 Bpe05g00581 Bpe07g00178 . . . Cmo16g01192 . . . . Sed04g1715 Cpe14g00944 . Bhi11g00193 Tan01g2028 Cmetu06g1269 . . Mch10g1562 . Cla10g00257 Cam10g0263 Cec10g0271 Cco10g0269 Clacu10g0265 Cmu10g1108 Cre10g0516 Cone8ag0396 . Cone6ag0672 Cone9ag0679 Lsi07g01302 . . Cme06g02571 . . . . . . . Bma12g00644 . . . . Cma16g01140 . Car16g01075 . . . . . . . . . . . . . . . . . Csa03g00275 Chy06g02047 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000979 4 2 2 4 4 2 3 2 2 2 2 2 3 2 2 4 2 6 4 2 2 3 2 2 2 2 2 6 3 3 83