Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag0679 ATGAGTATGATGAAAAGTAGTTCAACCTCCTCTCTAGGTCCCGACGGGTTAGACCTCACCCAAACATTCTTCAAGCCAATTCTCAATGCCGCCCCGCCCTTCCAAAGCAAACTCCCTTCCAAAATCTCCGTCATCGGAGCCGGCAACGTGGGCATGGCCATAGCGCAAACCATCCTGACCCAAAACCTTGTGGACGAGCTCGTCCTCGTCGACGCCAAGCCCGACAAGCTTCACGGAGAAATGCTCGACCTCCAACATGCCGCTGCCTTTCTCCCTCGCACAAAAATCCAAGCCTCCACTGATTACTCCGTAACTGCTAGATCCGACCTCTGCATCGTCACTGCTGGTGCCCGCCAGATTGCAAACGAGTCCAGGCTAAACCTGCTGCAGAGGAACGTAGCTCTTTTCAAAATTATCATACCGCAGCTCGCGCACTTCTCTCCTGATTGTATTCTACTGATCGTTTCAAACCCCGTGGACTTGTTGGCTTACGTGGCTTGGAAGCTTTCCGGGTTCCCCTCGAACCGGGTCATAGGATCCGGCACAAATCTTGACTCGTCTCGGTTCCGTTTCCTCATTGCAGATCATCTCGACGTTAACGCACAAGATGTTCAAGCGTACATAGTGGGAGAGCATGGGGACAGTTCAGTGGCGCTATGGTCGAGTATAAGCGTAGGAGGAGTGCCAGTTTTGAGCTTCTTAGAGAAGCAAGAGATTGCGTACGAGAAGGAAATGTTAGAGAAGATACATAAGGCGGTGATAGATAGTGCATATGAAGTGATCAATTTGAAGGGGTATACATCATGGGCAATAGGGTACTCTGTAGCAAATCTGGCTTGGAGTATACTTAGGAATCAGAGGAAGATCCACCCGGTTTCGGTTCTTGCGAAGGGGTTTTATGGGATTGAAGAGGGAGAATTGTTCTTGAGCTTGCCAGCTCAGCTGGGAAGGAGTGGTGTTTTAGGTGTCGCTAATGTTCATCTTACTGATGAGGAAGCTGACAGTCTTGGATGTTCTGCTAAGACCATTTTAGAGTTGCAGAATCAGTTGGAAATTTGA 1059 49.39 MSMMKSSSTSSLGPDGLDLTQTFFKPILNAAPPFQSKLPSKISVIGAGNVGMAIAQTILTQNLVDELVLVDAKPDKLHGEMLDLQHAAAFLPRTKIQASTDYSVTARSDLCIVTAGARQIANESRLNLLQRNVALFKIIIPQLAHFSPDCILLIVSNPVDLLAYVAWKLSGFPSNRVIGSGTNLDSSRFRFLIADHLDVNAQDVQAYIVGEHGDSSVALWSSISVGGVPVLSFLEKQEIAYEKEMLEKIHKAVIDSAYEVINLKGYTSWAIGYSVANLAWSILRNQRKIHPVSVLAKGFYGIEEGELFLSLPAQLGRSGVLGVANVHLTDEEADSLGCSAKTILELQNQLEI 352
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3442801 3444017 + Conep06aG0070100.1 Cone6ag0679 439563

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag0679 352 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 27 179 IPR036291 -
Cone6ag0679 352 CDD LDH_1 39 349 - -
Cone6ag0679 352 NCBIfam L-lactate dehydrogenase 44 343 IPR011304 GO:0004459(InterPro)|GO:0005737(InterPro)
Cone6ag0679 352 Gene3D - 37 181 - -
Cone6ag0679 352 PANTHER L-2-HYDROXYCARBOXYLATE DEHYDROGENASE (NAD(P)(+)) 19 351 - GO:0004459(PANTHER)|GO:0006089(PANTHER)|GO:0006090(PANTHER)
Cone6ag0679 352 Hamap L-lactate dehydrogenase [ldh]. 39 351 IPR011304 GO:0004459(InterPro)|GO:0005737(InterPro)
Cone6ag0679 352 Gene3D - 182 350 IPR015955 GO:0003824(InterPro)|GO:0016616(InterPro)
Cone6ag0679 352 PRINTS L-lactate dehydrogenase signature 153 173 IPR001557 GO:0016616(InterPro)|GO:0019752(InterPro)
Cone6ag0679 352 PRINTS L-lactate dehydrogenase signature 207 220 IPR001557 GO:0016616(InterPro)|GO:0019752(InterPro)
Cone6ag0679 352 PRINTS L-lactate dehydrogenase signature 41 65 IPR001557 GO:0016616(InterPro)|GO:0019752(InterPro)
Cone6ag0679 352 PRINTS L-lactate dehydrogenase signature 66 90 IPR001557 GO:0016616(InterPro)|GO:0019752(InterPro)
Cone6ag0679 352 PRINTS L-lactate dehydrogenase signature 177 195 IPR001557 GO:0016616(InterPro)|GO:0019752(InterPro)
Cone6ag0679 352 FunFam Malate dehydrogenase 35 181 - -
Cone6ag0679 352 ProSitePatterns L-lactate dehydrogenase active site. 209 215 IPR018177 GO:0004459(InterPro)
Cone6ag0679 352 Pfam lactate/malate dehydrogenase, NAD binding domain 41 179 IPR001236 GO:0016491(InterPro)
Cone6ag0679 352 Pfam lactate/malate dehydrogenase, alpha/beta C-terminal domain 182 344 IPR022383 GO:0016616(InterPro)
Cone6ag0679 352 PIRSF Lac_mal_DH 36 352 IPR001557 GO:0016616(InterPro)|GO:0019752(InterPro)
Cone6ag0679 352 SUPERFAMILY LDH C-terminal domain-like 180 350 IPR015955 GO:0003824(InterPro)|GO:0016616(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag0679 K00016 - - mtr:11427630 565.074
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone6ag0679 Cone-Chr6:3442801 Cone9ag0684 Cone-Chr9:3263979 2.08E-238 dispersed
Cone6ag0678 Cone-Chr6:3435319 Cone6ag0679 Cone-Chr6:3442801 3.86E-211 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g521 . . . . . . . Bma14g00041 . . . Cma15g01128 . Car15g01033 . . . . . . . . . . . . . . . . . . . Cone6ag0679 Cone9ag0684 . Csa05g00415 Chy09g01095 . Blo03g00416 . Bda07g00006 . . Bpe11g00266 . . . . Cmo15g01187 . . . . . Cpe13g00228 Bhi12g00434 . . . . . Lcy12g1823 Cla01g00391 Cam01g0408 Cec01g0400 Cco01g0421 Clacu01g0409 Cmu01g0390 Cre09g2120 Lsi09g00417 . . Cme09g01623
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004596 1 1 1 1 2 1 2 1 1 2 1 1 2 1 1 1 1 4 2 1 1 3 1 1 1 1 1 1 2 2 42