Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag0698 ATGTCATCTTCATCCTCTTCTTCTTCAGCTCCCACCTTGTCTCAACTGGACCACCACCACCTGCCTCCACCTCCCACCGAGCAGCTCTGTTATGTCCATTGCACCATCTGTGACACTGTCCTTGCTGTGAGCGTGCCTTGCAGCAGCTTGTTCAAGACCGTGACTGTCCGATGCGGCCACTGCTCCAATTTACTTCCGGTGAACATGCGCGGTCTTCTTCTGCCTTCTCCAACTAATCAATTTCACCCGCTTGGCCACTCTAATTTCTTCTCTCCTAACTCGCATAACCTCCTGGAAGATCAGTATATGATCACAAACCCAGTAGTACCCAACTTTCTGTTGAGCCAGATGACTGCAAATAATTTCACAATGCCGCCTCGTGGAGGAGTAGCAGATCATCATCAAGAGCTCCCGCGATCACCTCCAGTCATAAACAGACCTCCGGAGAAAAGACAGCGAGTTCCCTCTGCATACAACCGCTTCATCAAGGACGAGATCCAACGCATCAAGGCTGTGAATCCCGATATATCCCACCGGGAAGCTTTTAGCGCCGCAGCTAAGAATTGGGCTCACTTCCCACACATTCACTTTGGTCTCATGCCTGACCAGGTTGCTGCCAAGAAGACAACTATGCTCCAGGAAGGAGAGGACGGTATGCTTATGAGGGATGGAATTTTCAATTCAGCTAATCATTTGGGTATCTCCCCCATTAATTAG 717 49.79 MSSSSSSSSAPTLSQLDHHHLPPPPTEQLCYVHCTICDTVLAVSVPCSSLFKTVTVRCGHCSNLLPVNMRGLLLPSPTNQFHPLGHSNFFSPNSHNLLEDQYMITNPVVPNFLLSQMTANNFTMPPRGGVADHHQELPRSPPVINRPPEKRQRVPSAYNRFIKDEIQRIKAVNPDISHREAFSAAAKNWAHFPHIHFGLMPDQVAAKKTTMLQEGEDGMLMRDGIFNSANHLGISPIN 238
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3531312 3533667 - Conep06aG0072000.1 Cone6ag0698 439582

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag0698 238 Gene3D High mobility group box domain 144 204 IPR036910 -
Cone6ag0698 238 MobiDBLite consensus disorder prediction 1 15 - -
Cone6ag0698 238 Pfam YABBY protein 25 199 IPR006780 GO:0007275(InterPro)
Cone6ag0698 238 MobiDBLite consensus disorder prediction 1 20 - -
Cone6ag0698 238 FunFam Axial regulator YABBY 144 216 - -
Cone6ag0698 238 CDD HMG-box_SF 153 189 - -
Cone6ag0698 238 PANTHER PROTEIN YABBY 6-RELATED 26 207 IPR006780 GO:0005634(PANTHER)|GO:0007275(InterPro)|GO:0009944(PANTHER)|GO:0010154(PANTHER)|GO:0010158(PANTHER)|GO:0045165(PANTHER)|GO:1902183(PANTHER)|GO:2000024(PANTHER)
Cone6ag0698 238 MobiDBLite consensus disorder prediction 130 152 - -
Cone6ag0698 238 SUPERFAMILY HMG-box 138 192 IPR036910 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag0698 K25796 - - mdm:103437137 317.775
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag1432 Cone-Chr11:10218346 Cone6ag0698 Cone-Chr6:3531312 7.26E-57 dispersed
Cone18ag0157 Cone-Chr18:828939 Cone6ag0698 Cone-Chr6:3531312 4.03E-37 dispersed
Cone5ag1310 Cone-Chr5:7541587 Cone6ag0698 Cone-Chr6:3531312 3.96E-29 dispersed
Cone6ag0698 Cone-Chr6:3531312 Cone7ag0628 Cone-Chr7:3163738 3.59E-33 dispersed
Cone12ag0372 Cone-Chr12:2132460 Cone6ag0698 Cone-Chr6:3531312 3.38E-93 wgd
Cone6ag0698 Cone-Chr6:3531312 Cone8ag0386 Cone-Chr8:2354763 8.25E-95 wgd
Cone6ag0698 Cone-Chr6:3531312 Cone9ag0698 Cone-Chr9:3356189 9.96E-153 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g495 Blo02g01054 . Bda06g00039 Bda08g00564 Bpe05g00592 Bpe07g00159 . Bma14g00033 Cmo06g00784 . . Cma15g01149 . Car15g01044 . . . . . . . . . . Cla10g00285 Cam10g0296 Cec10g0303 Cco10g0299 Clacu10g0295 Cmu10g1134 Cre10g0542 . . Cone6ag0698 Cone9ag0698 Lsi07g01331 Csa05g00395 Chy09g01118 Cme06g02614 Blo03g00407 . Bda07g00010 . . Bpe11g00259 . . . . Cmo15g01209 Cma06g00763 . Car06g00681 . Cpe08g00754 Cpe13g00219 Bhi12g00406 . . . . . Lcy12g1797 Cla01g00368 Cam01g0388 Cec01g0381 Cco01g0399 Clacu01g0387 Cmu01g0368 Cre09g2142 Lsi09g00397 Csa03g00304 Chy06g02018 Cme09g01648
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone13ag0895 . 1 171 C2C2-YABBY Transcription Factor Family AT1G69180 66.9 1.9e-49 193.0
Cone19ag0892 . 1 155 C2C2-YABBY Transcription Factor Family AT1G69180 58.2 1.1e-41 167.2
Cone9ag0698 . 69 236 C2C2-YABBY Transcription Factor Family AT2G45190 54.9 3.9e-41 165.2
Cone12ag0372 . 66 230 C2C2-YABBY Transcription Factor Family AT2G45190 57.2 6.7e-41 164.5
Cone8ag0386 . 69 233 C2C2-YABBY Transcription Factor Family AT2G45190 57.5 7.4e-40 161.0
Cone6ag0698 . 69 236 C2C2-YABBY Transcription Factor Family AT2G45190 53.5 4.8e-39 158.3
Cone11ag1432 . 5 178 C2C2-YABBY Transcription Factor Family AT1G08465 60.0 4.0e-50 195.3
Cone12ag0372 . 23 205 C2C2-YABBY Transcription Factor Family AT1G08465 54.1 3.0e-42 169.1
Cone6ag0698 . 26 218 C2C2-YABBY Transcription Factor Family AT1G08465 50.8 3.4e-41 165.6
Cone8ag0386 . 26 202 C2C2-YABBY Transcription Factor Family AT1G08465 53.7 4.4e-41 165.2
Cone4ag0666 . 11 175 C2C2-YABBY Transcription Factor Family AT1G08465 54.5 9.8e-41 164.1
Cone18ag0157 . 1 150 C2C2-YABBY Transcription Factor Family AT1G08465 60.7 9.8e-41 164.1
Cone9ag0698 . 36 235 C2C2-YABBY Transcription Factor Family AT4G00180 56.8 2.8e-52 202.6
Cone6ag0698 . 36 235 C2C2-YABBY Transcription Factor Family AT4G00180 56.5 8.2e-52 201.1
Cone8ag0386 . 36 232 C2C2-YABBY Transcription Factor Family AT4G00180 51.7 1.1e-45 180.6
Cone12ag0372 . 33 229 C2C2-YABBY Transcription Factor Family AT4G00180 52.4 2.2e-44 176.4
Cone4ag0666 . 11 176 C2C2-YABBY Transcription Factor Family AT2G26580 72.5 5.3e-62 234.6
Cone11ag1432 . 4 177 C2C2-YABBY Transcription Factor Family AT2G26580 54.6 4.9e-44 174.9
Cone6ag0698 . 26 200 C2C2-YABBY Transcription Factor Family AT2G26580 50.8 1.3e-41 166.8
Cone9ag0698 . 26 208 C2C2-YABBY Transcription Factor Family AT2G26580 50.3 1.8e-41 166.4
Cone8ag0386 . 26 198 C2C2-YABBY Transcription Factor Family AT2G26580 52.0 1.9e-40 162.9
Cone12ag0372 . 23 193 C2C2-YABBY Transcription Factor Family AT2G26580 52.0 1.5e-37 153.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001283 4 1 4 3 5 2 3 2 2 2 2 2 3 2 2 3 2 4 4 2 2 2 2 2 2 2 2 4 2 2 76
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46318 PF03106 WRKY 4.80E-24 CL0274 Cone TF