Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag0698 ATGTCATCTTCATCCTCTTCTTCTTCAGCTCCCACCTTGTCTCAACTGGACCACCACCACCTGCCTCCACCTCCCACCGAGCAGCTCTGTTATGTCCATTGCACCATCTGTGACACTGTCCTTGCTGTGAGCGTGCCTTGCAGCAGCTTGTTCAAGACCGTGACTGTCCGATGCGGCCACTGCTCCAATTTACTTCCGGTGAACATGCGCGGTCTTCTTCTGCCTTCTCCAACTAATCAATTTCACCCGCTTGGCCACTCTAATTTCTTCTCTCCTAACTCGCATAACCTCCTGGAAGATCAGTATATGATCACAAACCCAGTAGTACCCAACTTTCTGTTGAGCCAGATGACTGCAAATAATTTCACAATGCCGCCTCGTGGAGGAGTAGCAGATCATCATCAAGAGCTCCCGCGATCACCTCCAGTCATAAACAGACCTCCGGAGAAAAGACAGCGAGTTCCCTCTGCATACAACCGCTTCATCAAGGACGAGATCCAACGCATCAAGGCTGTGAATCCCGATATATCCCACCGGGAAGCTTTTAGCGCCGCAGCTAAGAATTGGGCTCACTTCCCACACATTCACTTTGGTCTCATGCCTGACCAGGTTGCTGCCAAGAAGACAACTATGCTCCAGGAAGGAGAGGACGGTATGCTTATGAGGGATGGAATTTTCAATTCAGCTAATCATTTGGGTATCTCCCCCATTAATTAG 717 49.79 MSSSSSSSSAPTLSQLDHHHLPPPPTEQLCYVHCTICDTVLAVSVPCSSLFKTVTVRCGHCSNLLPVNMRGLLLPSPTNQFHPLGHSNFFSPNSHNLLEDQYMITNPVVPNFLLSQMTANNFTMPPRGGVADHHQELPRSPPVINRPPEKRQRVPSAYNRFIKDEIQRIKAVNPDISHREAFSAAAKNWAHFPHIHFGLMPDQVAAKKTTMLQEGEDGMLMRDGIFNSANHLGISPIN 238
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3531312 3533667 - Conep06aG0072000.1 Cone6ag0698 439582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag0698 238 Gene3D High mobility group box domain 144 204 IPR036910 -
Cone6ag0698 238 MobiDBLite consensus disorder prediction 1 15 - -
Cone6ag0698 238 Pfam YABBY protein 25 199 IPR006780 GO:0007275(InterPro)
Cone6ag0698 238 MobiDBLite consensus disorder prediction 1 20 - -
Cone6ag0698 238 FunFam Axial regulator YABBY 144 216 - -
Cone6ag0698 238 CDD HMG-box_SF 153 189 - -
Cone6ag0698 238 PANTHER PROTEIN YABBY 6-RELATED 26 207 IPR006780 GO:0005634(PANTHER)|GO:0007275(InterPro)|GO:0009944(PANTHER)|GO:0010154(PANTHER)|GO:0010158(PANTHER)|GO:0045165(PANTHER)|GO:1902183(PANTHER)|GO:2000024(PANTHER)
Cone6ag0698 238 MobiDBLite consensus disorder prediction 130 152 - -
Cone6ag0698 238 SUPERFAMILY HMG-box 138 192 IPR036910 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag1432 Cone-Chr11:10218346 Cone6ag0698 Cone-Chr6:3531312 7.26E-57 dispersed
Cone18ag0157 Cone-Chr18:828939 Cone6ag0698 Cone-Chr6:3531312 4.03E-37 dispersed
Cone5ag1310 Cone-Chr5:7541587 Cone6ag0698 Cone-Chr6:3531312 3.96E-29 dispersed
Cone6ag0698 Cone-Chr6:3531312 Cone7ag0628 Cone-Chr7:3163738 3.59E-33 dispersed
Cone12ag0372 Cone-Chr12:2132460 Cone6ag0698 Cone-Chr6:3531312 3.38E-93 wgd
Cone6ag0698 Cone-Chr6:3531312 Cone8ag0386 Cone-Chr8:2354763 8.25E-95 wgd
Cone6ag0698 Cone-Chr6:3531312 Cone9ag0698 Cone-Chr9:3356189 9.96E-153 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46318 PF03106 WRKY 4.80E-24 CL0274 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag0698 K25796 - mdm:103437137 317.775