Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag0716 ATGGCTTCAAAGGCAGCGACGCCAAACAACTGCACCTCTCTTCAGACGGGTCGGATCCGGGTTTTAAAGGAAGGTTTAAGATCGTCGGAGAAAGACGTTGTTGGGCCGGTTGTTTACTGGATGTTCAGGGATCAGAGGCTGAGAGACAATTGGGCTTTAATCCACGCCGTTGATCAGGCTAAGTTGGCCCGTGTTCCAGTAGCTGTGGCGTTCAATCTGTTCGATCAGTTTTTGGGTGCAAAAGCTCGGCAATTAGGGTTTATGTTGAGGGGTTTGCGGCAATTGCATTCTGATCTTGAGGAAACCCTTCAAGTCCCCTTCTTTCTATTCCAGGGAGAAGCTGAAGAGACCATACCGAATTTTCTGAAAGAATGTGGGGCTTCACTTTTGGTTACAGACTTCTCGCCATTACGAGAAATTCGAAAATGTAAGGATGAAATTAGTAAGAAGGTGAGTGATTCCTTGGCCATACATGAAGTCGATGCCCACAATGTTGTACCCATTTGGGCTGCCTCTGAGAAGTTGGAGTATAGTGCTAGGACTTTAAGAGGCAAGATAAATAAAAAGCTTCCAGAATATCTCATCAATTTTCCCATTCTACAATCGCCTAATAACAAATGGCCTTCTACAAATCGGTTTATCGATTGGGATGCTCTCATTGCCAAAATTTTGAGGAAAGGGGGTGAAGTTCCTGAAATTGAATGGTGTGAACCTGGAGAAAGGGCAGGAATGGACGTATTGATGGGAAGCAAAAATGGTTTCTTGACGAAAAGAATGATGAGTTATGCAACAGATAGGAATAATCCTTTAAAGCCTAAGGCCCTGTCTGGTCTCTCTCCCTATCTCCATTTTGGGCAAATATCTGCACAGCGCTGTGCCTTAGAGGCACAAAAAGTCCGTAACTTATCTCCTCAGGCTGTTGATTCATTTCTCGAGGAACTGATTGTGAGGAGAGAGCTTGCTGATAACTACTGCTATTACCAGCCTCATTATGATTCACTAGACGGGGCTTGGGAGTGGGCACGGAAGACTTTGATGGACCATGCTTCCGACAAGCGGGAACATAATTACACGAGGGAGCAACTGGAGAAGGCCCAGACGGCTGATCCACTCTGGAATGCTTCTCAGTTGGAGATGGCTTACTATGGGAAGATGCATGGTTTTATGCGGATGTACTGGGCAAAAAAGATTCTAGAGTGGACAAGAGGACCTGAAGAAGCCCTGGAAATAGCAATATATCTGAATGACAAGTATGAAATAGATGGGAGGGATCCAAGTGGTTATGTTGGCTGCATGTGGTCGATTTGTGGCGTTCATGACCAGGGGTGGAAAGAGCGGAAAATATTTGGGAAGATAAGGTATATGAATTATGCAGGCTGCAAGAGGAAATTTGACGTTGACGGATATATTAACTATGTAAAGAGGCTTGTGGGTGAAATCAAGAAGAGAAAAGCTGAGAGCTTGCTAGATAGAAAGGCAAAGGAACTCCGTCGCTAG 1497 44.96 MASKAATPNNCTSLQTGRIRVLKEGLRSSEKDVVGPVVYWMFRDQRLRDNWALIHAVDQAKLARVPVAVAFNLFDQFLGAKARQLGFMLRGLRQLHSDLEETLQVPFFLFQGEAEETIPNFLKECGASLLVTDFSPLREIRKCKDEISKKVSDSLAIHEVDAHNVVPIWAASEKLEYSARTLRGKINKKLPEYLINFPILQSPNNKWPSTNRFIDWDALIAKILRKGGEVPEIEWCEPGERAGMDVLMGSKNGFLTKRMMSYATDRNNPLKPKALSGLSPYLHFGQISAQRCALEAQKVRNLSPQAVDSFLEELIVRRELADNYCYYQPHYDSLDGAWEWARKTLMDHASDKREHNYTREQLEKAQTADPLWNASQLEMAYYGKMHGFMRMYWAKKILEWTRGPEEALEIAIYLNDKYEIDGRDPSGYVGCMWSICGVHDQGWKERKIFGKIRYMNYAGCKRKFDVDGYINYVKRLVGEIKKRKAESLLDRKAKELRR 498
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3602577 3605372 - Conep06aG0073800.1 Cone6ag0716 439600

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag0716 498 ProSiteProfiles Photolyase/cryptochrome alpha/beta domain profile. 35 168 IPR006050 -
Cone6ag0716 498 NCBIfam deoxyribodipyrimidine photo-lyase 13 472 IPR008148 GO:0003904(InterPro)|GO:0006281(InterPro)
Cone6ag0716 498 Gene3D HUPs 13 162 IPR014729 -
Cone6ag0716 498 Gene3D - 163 333 - -
Cone6ag0716 498 FunFam Deoxyribodipyrimidine photolyase 163 333 - -
Cone6ag0716 498 PANTHER DEOXYRIBODIPYRIMIDINE PHOTOLYASE 14 496 IPR052219 GO:0000719(PANTHER)|GO:0003904(PANTHER)
Cone6ag0716 498 SUPERFAMILY Cryptochrome/photolyase, N-terminal domain 36 219 IPR036155 -
Cone6ag0716 498 Pfam DNA photolyase 37 194 IPR006050 -
Cone6ag0716 498 Gene3D DNA Cyclobutane Dipyrimidine Photolyase, subunit A, domain 3 334 484 - -
Cone6ag0716 498 SUPERFAMILY Cryptochrome/photolyase FAD-binding domain 228 486 IPR036134 -
Cone6ag0716 498 FunFam Deoxyribodipyrimidine photolyase 334 481 - -
Cone6ag0716 498 FunFam Deoxyribodipyrimidine photolyase 13 162 - -
Cone6ag0716 498 ProSitePatterns DNA photolyases class 2 signature 2. 437 456 IPR032673 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag0716 K01669 - - csv:101211446 825.083
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone9ag0717 Cone-Chr9:3432049 Cone6ag0716 Cone-Chr6:3602577 3.33E-49 transposed
Cone6ag0716 Cone-Chr6:3602577 Cone9ag0716 Cone-Chr9:3431162 1.22E-59 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g476 . . . . . . . Bma14g00015 . . . . Car02g01268 . . . . . . . . . . . . . . . . . . . . Cone6ag0716 Cone9ag0717 . Csa05g00371 . . Blo03g00391 . . . . Bpe11g00249 . . . Cmo02g01547 . . . . . . Cpe13g00206 Bhi12g00370 . . Lac11g2214 Hepe06g1631 . Lcy12g1755 Cla01g00346 Cam01g0362 Cec01g0358 Cco01g0371 Clacu01g0365 Cmu01g0345 Cre09g2164 Lsi09g00373 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012469 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29