Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag0724 ATGAGAAGGCTGTGTTTGTTTCGTCTCTCTCATGCTCTTCTGTGCTTCATTTATGTCTTTCTTCTTAGTAGAATCGTAATGGTATCACCTCAAACAGAGAAGGAGATTTTGCTCCAATTCAAAGGTAATATCACAAATGATCCATATGATAGCTTGAAAACATGGGTTTTAAATGAAGATCCTTGCCTAGATTACAAAGGTGTGTTCTGCAACTCTGCCAGATTTGTCGAAAAGATAGTTCTATGGAACACTAGCTTGGCCGGAGTTTTATCCCCTTCTTTATCAAAGTTAAAGTCTTTACGGATTTTGACATTGTTCGGAAACCAATTTTCAGGCAATATACCTAATGAGTATACTGATCTTAAAACACTTTGGAAAATCAATGTGAGCTCCAATGCTTTATCTGGGTCAATCCCAGATTTCATTGGCGATTTGCTTAGCATTCGTTTTCTGGATTTGTCAAAGAATAGCTTTACTGGAGAAATACCTTCCAGTTTGTTTAAGTACTGTGAAAAAACCAGATATGTTTCATTGTCTCATAACAGTCTTTCGGGTTCGATTCCGAGCTCCATTCTAAACTGCTTGAATCTAGAAGGGTTTGATTTCTCGGACAACAATCTAACTGGAGGGATTCCTTTGCGAATTTGCGACATTCCAAGACTAGAATATGTCTCAGTGAGAAGCAATATGTTATATGGTAGTCATGTAGAGGAGCAGTTTCTTTCATGCCAGAGCTTGAAATTGTTGGATCTTGGAAGCAATATGTTTAACGGGTCAGCCCCGTTTGGAGTTCTTGGATTAAAAAATATCACTTACTTCAATACATCTCGTAACGGGTTTAGTGGGGTCATTCCTGATATATCAGATTGTAGTGAGCAAATGGAGATTTTTGACGTTTCAGGAAATTTTTTCAGTGGGGAGATCCCATTGAGCATTTCAAAATGTGAGAGCCTTAAAGTCTTGGATTTGAGTTATAACAATCTAAAGGGGAGCATCCCTGTTGAAATTGCATCCATGAATTCCTTATGGGTGATTCGTTTGGGTAATAATTCAATAGACGGCGAGATTCCCCCAATGTTTTCAAGTATTGAATTGCTTGAAGTTTTGGATTTGCATAATCTCAACCTTGTGGGCGAAATTCCGGACAGTATAAGTCATTGCCGGTTTCTTCTCGAGCTGGACTTTTCCACTAATCACTTAGAAGGAGAGATTCCTCAAACCCTTTACAACATGACATACCTTGAAATTCTCGACTTACATGAAAACAAATTAAACGGAACTATCCCACTAAGCCTTGGAACCCTCTCAAAACTCCAAACTTTGGATCTTTCACAGAATTCACTTTCTGGGTCAATCCCGTTTTCCCTTGCAAACCTTACTCTTCTACAACATTTCAACGTCTCTTTCAACAACCTCTCCGGCACTATCCCATCAGTTAATACCCTCCAAGGTTTTGGCCCCTCTGCGTTTTCTAACAACCCTTTCCTCTGTGGGCCCCCTCTTGGTCCATGTTCTGGAAATGGTAACGGAACCACTTCCAAATCAGTCAAAAACAAGGTCCTCAGTCCATCTTCAATTGTTGCAATAGTTGCTGCTGCCCTGATTCTGACCGGAGTTTGTGTCGTATCTGCTATGAACATCTTGGCCCGAAGGAAGAGGAGGAAGAAGAAGGAGGGTAGTAACTCAATGGTTACTGAAAGTACCCCCCTTGGCTCATCCGACCCTAGCGTTATTATAGGAAAACTCGTTCTCTTTAGCAAAAGTTTGCCCTCAAAGTATGAAGATTGGGAGGCAGGTACTAAAGCATTGCTCAATAAGGAAAATCTAATAGGTGGTGGTTTGATCGGTTCGGTTTATAGGAGTAATTTTGAAGGTGGGGTCTCCATTGCAGTTAAAAGGCTCGAAACTTTAGGAAGGATCAGAAACCAAGATGAGTTTGAGCAAGAAATTGGACGATTAGGTAATCTTAGGCACCCAAATTTAGTTTCTTTTCAAGGGTATTATTGGTCCTCTACTATGCAGTTGATTCTATCCGAATTTGTCCCGAATGGAAATTTGTATGACAATCTACACGGTCTTAATTACCCGGGCACAAGCACGGGTAGTGGAAATCGTGAATTACATTGGTCTAGAAGGTTCCGGATTGCTCTAGGATCAGCTCAGGCTCTTTCTTATCTTCACCATGACTGTAAACCTCCGATCCTTCACCTCAACATAAAATCCTCTAACATACTCTTAGATGAAAAGTATGAACCCAAGCTGTCAGATTATGGGTTGGGGAAATTGCTTCCACTTTTGGACAACTATGTTTTGACAAAGTTCCATACAGCTGTTGGGTATGTTGCGCCGGAATTGGCTCAGAGCTTGAGACTGAGTGAAAAATGTGATGTTTATAGCTTTGGAGTAATTCTGTTTGAGCTTGTGACGGGAAGAAAACCCGTGGAGAGTCCTAGAGTAAATGAGGTGGTGGTATTGTGTGAATATGTAAGAGGGTTGTTGGAAAGTGGGTCTGCTTGTGATTGTTTCGATAGGAGTTTACGTGGTTTCGAAGAGACCGAGCTGATACAAGTCATGAAGTTGGGTTTGATTTGTACGTCAGAGATTCCCTCGAAGAGACCAAGCATGGCCGAGGTTGTTCAAGTGCTTGAGTCTATAAGAAATGGCATAAGCTCCTAA 2676 40.92 MRRLCLFRLSHALLCFIYVFLLSRIVMVSPQTEKEILLQFKGNITNDPYDSLKTWVLNEDPCLDYKGVFCNSARFVEKIVLWNTSLAGVLSPSLSKLKSLRILTLFGNQFSGNIPNEYTDLKTLWKINVSSNALSGSIPDFIGDLLSIRFLDLSKNSFTGEIPSSLFKYCEKTRYVSLSHNSLSGSIPSSILNCLNLEGFDFSDNNLTGGIPLRICDIPRLEYVSVRSNMLYGSHVEEQFLSCQSLKLLDLGSNMFNGSAPFGVLGLKNITYFNTSRNGFSGVIPDISDCSEQMEIFDVSGNFFSGEIPLSISKCESLKVLDLSYNNLKGSIPVEIASMNSLWVIRLGNNSIDGEIPPMFSSIELLEVLDLHNLNLVGEIPDSISHCRFLLELDFSTNHLEGEIPQTLYNMTYLEILDLHENKLNGTIPLSLGTLSKLQTLDLSQNSLSGSIPFSLANLTLLQHFNVSFNNLSGTIPSVNTLQGFGPSAFSNNPFLCGPPLGPCSGNGNGTTSKSVKNKVLSPSSIVAIVAAALILTGVCVVSAMNILARRKRRKKKEGSNSMVTESTPLGSSDPSVIIGKLVLFSKSLPSKYEDWEAGTKALLNKENLIGGGLIGSVYRSNFEGGVSIAVKRLETLGRIRNQDEFEQEIGRLGNLRHPNLVSFQGYYWSSTMQLILSEFVPNGNLYDNLHGLNYPGTSTGSGNRELHWSRRFRIALGSAQALSYLHHDCKPPILHLNIKSSNILLDEKYEPKLSDYGLGKLLPLLDNYVLTKFHTAVGYVAPELAQSLRLSEKCDVYSFGVILFELVTGRKPVESPRVNEVVVLCEYVRGLLESGSACDCFDRSLRGFEETELIQVMKLGLICTSEIPSKRPSMAEVVQVLESIRNGISS 891
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3656883 3660792 + Conep06aG0074600.1 Cone6ag0724 439608
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag0724 891 Gene3D Ribonuclease Inhibitor 388 505 IPR032675 -
Cone6ag0724 891 Gene3D Phosphorylase Kinase; domain 1 581 680 - -
Cone6ag0724 891 FunFam Leucine-rich repeat receptor-like protein kinase TDR 286 506 - -
Cone6ag0724 891 Gene3D Ribonuclease Inhibitor 290 383 IPR032675 -
Cone6ag0724 891 ProSiteProfiles Leucine-rich repeat profile. 437 460 IPR001611 GO:0005515(InterPro)
Cone6ag0724 891 ProSiteProfiles Leucine-rich repeat profile. 317 339 IPR001611 GO:0005515(InterPro)
Cone6ag0724 891 SUPERFAMILY L domain-like 167 503 - -
Cone6ag0724 891 PRINTS Leucine-rich repeat signature 318 331 - -
Cone6ag0724 891 PRINTS Leucine-rich repeat signature 435 448 - -
Cone6ag0724 891 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 315 410 IPR046959 -
Cone6ag0724 891 SUPERFAMILY Outer arm dynein light chain 1 75 195 - -
Cone6ag0724 891 Pfam Protein tyrosine and serine/threonine kinase 606 881 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone6ag0724 891 Gene3D Ribonuclease Inhibitor 29 289 IPR032675 -
Cone6ag0724 891 Gene3D Transferase(Phosphotransferase) domain 1 681 890 - -
Cone6ag0724 891 ProSiteProfiles Protein kinase domain profile. 604 885 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone6ag0724 891 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 681 891 - -
Cone6ag0724 891 SUPERFAMILY Protein kinase-like (PK-like) 605 883 IPR011009 -
Cone6ag0724 891 FunFam Putative LRR receptor-like serine/threonine-protein kinase 581 680 - -
Cone6ag0724 891 Pfam Leucine rich repeat N-terminal domain 31 71 IPR013210 -
Cone6ag0724 891 CDD STKc_IRAK 610 885 - -
Cone6ag0724 891 Pfam Leucine Rich Repeat 414 435 IPR001611 GO:0005515(InterPro)
Cone6ag0724 891 Pfam Leucine Rich Repeat 366 387 IPR001611 GO:0005515(InterPro)
Cone6ag0724 891 Pfam Leucine Rich Repeat 317 339 IPR001611 GO:0005515(InterPro)
Cone6ag0724 891 Pfam Leucine Rich Repeat 437 459 IPR001611 GO:0005515(InterPro)
Cone6ag0724 891 Pfam Leucine Rich Repeat 147 167 IPR001611 GO:0005515(InterPro)
Cone6ag0724 891 Pfam Leucine Rich Repeat 174 194 IPR001611 GO:0005515(InterPro)
Cone6ag0724 891 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 168 260 - -
Cone6ag0724 891 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g12460 30 167 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone19ag1453 Cone-Chr19:9435329 Cone6ag0724 Cone-Chr6:3656883 5.19E-83 dispersed
Cone6ag0724 Cone-Chr6:3656883 Cone5ag0575 Cone-Chr5:2489788 5.99E-56 dispersed
Cone6ag0724 Cone-Chr6:3656883 Cone9ag0730 Cone-Chr9:3477552 1.87E-72 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82926 None None None None Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag0724 - - - 0.0