Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag0734 ATGGCTTCTTCCTACTTTCATTCATGGAGTTTCAGCTTCTTATTGATGCTGTTTATTATAGCCGCATACATGGTCGAGTTCACGCTTTCCATATACCGACCGAGTTCATGGCGCCTTGCTCATGCCACCTTTTACGGCGATGAGACTGCCTCAGAAACTATGGGAGGAGCCTGTGGGTATGGAAACTTGTTCGTAAATGGATATGGAACAGACACTGCAGCATTGAGCTCAACACTGTTCAACAACGGTTATGCATGTGGAACATGTTACCAGATAAAATGTTACCGATCCCCACATTGCTTCCCGAGCGTGTCTTTCACCACGGTCACTGCGACAAACCTTTGTCCGCCTAACTGGGCCCAAGATTCGAACGCAGGAGGGTGGTGCAACCCGCCTAGGACCCACTTCGACATGGCCAAACCCGCTTTCATGAAAATCGCTAACTGGAAAGCTGGCATCATCCCCGTTCTCTACCGCAGGGTACCATGCGTAAGACGAGGTGGGCTTAGATTCACTTTCCAAGGAAATGGGTACTGGCTACTAGTGTATGTGATGAACGTAGGAGGAGCAGGTGACGTGTCTGGAATGTGGGTGAAAGGAAGCAAGACTGGTTGGATCAAGATGAGCCATAATTGGGGAGCTTCATATCAAGCATTTGCAGTGCTTGGAGGCCAATCTCTTTCTTTTAGGATCACCTGTTACACGACTAGGCAGACTATTACAGCTTGGAACGTTGCTCCTTCCAATTGGAATGTCGGATTGACTTATCAAACGAAGGTCAATTTCCGTTGA 792 48.11 MASSYFHSWSFSFLLMLFIIAAYMVEFTLSIYRPSSWRLAHATFYGDETASETMGGACGYGNLFVNGYGTDTAALSSTLFNNGYACGTCYQIKCYRSPHCFPSVSFTTVTATNLCPPNWAQDSNAGGWCNPPRTHFDMAKPAFMKIANWKAGIIPVLYRRVPCVRRGGLRFTFQGNGYWLLVYVMNVGGAGDVSGMWVKGSKTGWIKMSHNWGASYQAFAVLGGQSLSFRITCYTTRQTITAWNVAPSNWNVGLTYQTKVNFR 263
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3709224 3710316 + Conep06aG0075700.1 Cone6ag0734 439618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag0734 263 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 55 168 IPR007112 -
Cone6ag0734 263 SUPERFAMILY Barwin-like endoglucanases 17 186 IPR036908 -
Cone6ag0734 263 CDD DPBB_EXPA_N 37 163 - -
Cone6ag0734 263 Pfam Expansin C-terminal domain 170 247 IPR007117 -
Cone6ag0734 263 PRINTS Expansin/Lol pI family signature 76 94 IPR007118 GO:0005576(InterPro)
Cone6ag0734 263 PRINTS Expansin/Lol pI family signature 244 258 IPR007118 GO:0005576(InterPro)
Cone6ag0734 263 PRINTS Expansin/Lol pI family signature 36 51 IPR007118 GO:0005576(InterPro)
Cone6ag0734 263 PRINTS Expansin/Lol pI family signature 54 72 IPR007118 GO:0005576(InterPro)
Cone6ag0734 263 PRINTS Expansin/Lol pI family signature 151 167 IPR007118 GO:0005576(InterPro)
Cone6ag0734 263 PRINTS Expansin/Lol pI family signature 205 219 IPR007118 GO:0005576(InterPro)
Cone6ag0734 263 SUPERFAMILY PHL pollen allergen 165 257 IPR036749 -
Cone6ag0734 263 Gene3D - 27 163 IPR036908 -
Cone6ag0734 263 PANTHER EXPANSIN-A15 18 259 IPR002963 GO:0009664(InterPro)
Cone6ag0734 263 SMART dpbb_1 72 158 IPR007112 -
Cone6ag0734 263 Gene3D - 169 263 IPR036749 -
Cone6ag0734 263 PRINTS Expansin signature 143 156 IPR002963 GO:0009664(InterPro)
Cone6ag0734 263 PRINTS Expansin signature 126 143 IPR002963 GO:0009664(InterPro)
Cone6ag0734 263 PRINTS Expansin signature 67 81 IPR002963 GO:0009664(InterPro)
Cone6ag0734 263 PRINTS Expansin signature 244 260 IPR002963 GO:0009664(InterPro)
Cone6ag0734 263 PRINTS Expansin signature 107 117 IPR002963 GO:0009664(InterPro)
Cone6ag0734 263 PRINTS Expansin signature 167 179 IPR002963 GO:0009664(InterPro)
Cone6ag0734 263 PRINTS Expansin signature 179 200 IPR002963 GO:0009664(InterPro)
Cone6ag0734 263 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 178 258 IPR007117 -
Cone6ag0734 263 Pfam Lytic transglycolase 72 158 IPR009009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone6ag0734 Cone-Chr6:3709224 Cone7ag1075 Cone-Chr7:8181630 1.71E-92 dispersed
Cone12ag0334 Cone-Chr12:1836858 Cone6ag0734 Cone-Chr6:3709224 7.57E-157 wgd
Cone6ag0734 Cone-Chr6:3709224 Cone8ag0340 Cone-Chr8:1951447 8.56E-154 wgd
Cone6ag0734 Cone-Chr6:3709224 Cone9ag0738 Cone-Chr9:3513641 2.21E-190 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag0734 - - - 0.0