Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cone6ag0737 | ATGCAAGAACCCGGCGGCTCCGGAATACTGATGGGGTCGGCTGGTGGGAATAGTAGCGGAGGCGGCGGCGGCGAGGTGGGGGTAGGAGAGCAGTACCTTCAACATCATCATCGTCACGATGATGATCATCAGGCGCGGCAGCTGAAGGCGGATATAGCGACGCACCCGCTGTACGAGCAGCTTCTGGTGGCACACGTGGCATGCTTACGTGTGGCGACGCCAATCGATCAGTTGCCTCTGATCGACGCACAGTTAGCTCAGTCGCACCATATTCTTCGGTCCTACGCTTCTTATCAGCACCAGCAAGCTCCGCTCCTCTCCCACCATGAACGCCAAGAACTCGACAACTTCTTGGCGCAGTATTTGATAGTTCTGTGCACATTCAAAGAACAGCTTCAGCAGCATGTTAGAGTCCATGCGGTTGAAGCTGTCATGGCCTGTCGTGAAATCGAAACTACATTACAGGCTCTCACTGGAGCAAGTTTGGGTGAAGGAACGGGTGCTACAATGTCAGATGATGAGGAAGAAGACATGCATATGGATTTTTGCTTAGATCAGTCTGCTTCTGATGGCCATGACATGATGGGACTTGGCCCTTTACTTCCTACTGAAGCTGAAAGGTCTTTAATGGAAAGGGTTCGACAGGAATTGAAGATTGAGCTCAAGCAGGGATTCAGGTCAAGAATAGAAGATGTGAGAGAAGAAATATTAAGGAAGAGAAGGGCAGGGAAGTTGCCAGGAGACACAACCACTGTCTTGAAGAATTGGTGGCAGCAACATTCTAAGTGGCCTTACCCAACTGAAGATGACAAGGCAAAACTGGTAGAGGAAACAGGATTGCAGCTCAAACAAATAAACAATTGGTTCATAAACCAAAGGAAGAGAAACTGGCACAGCAATTCTCAGTCCCTCACCTCTTTGAAATCCAAGCGCAAAAGATAA | 942 | 49.26 | MQEPGGSGILMGSAGGNSSGGGGGEVGVGEQYLQHHHRHDDDHQARQLKADIATHPLYEQLLVAHVACLRVATPIDQLPLIDAQLAQSHHILRSYASYQHQQAPLLSHHERQELDNFLAQYLIVLCTFKEQLQQHVRVHAVEAVMACREIETTLQALTGASLGEGTGATMSDDEEEDMHMDFCLDQSASDGHDMMGLGPLLPTEAERSLMERVRQELKIELKQGFRSRIEDVREEILRKRRAGKLPGDTTTVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSNSQSLTSLKSKRKR | 313 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 6 | 3726221 | 3729297 | + | Conep06aG0076000.1 | Cone6ag0737 | 439621 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cone6ag0737 | 313 | Pfam | KNOX1 domain | 48 | 89 | IPR005540 | GO:0003677(InterPro)|GO:0005634(InterPro) | |
| Cone6ag0737 | 313 | Pfam | Homeobox KN domain | 256 | 295 | IPR008422 | GO:0003677(InterPro)|GO:0006355(InterPro) | |
| Cone6ag0737 | 313 | SMART | HOX_1 | 238 | 303 | IPR001356 | GO:0003677(InterPro) | |
| Cone6ag0737 | 313 | Pfam | KNOX2 domain | 107 | 158 | IPR005541 | GO:0003677(InterPro)|GO:0005634(InterPro) | |
| Cone6ag0737 | 313 | SUPERFAMILY | Homeodomain-like | 238 | 303 | IPR009057 | - | |
| Cone6ag0737 | 313 | CDD | homeodomain | 239 | 300 | IPR001356 | GO:0003677(InterPro) | |
| Cone6ag0737 | 313 | SMART | KNOX1_2 | 46 | 90 | IPR005540 | GO:0003677(InterPro)|GO:0005634(InterPro) | |
| Cone6ag0737 | 313 | Gene3D | - | 235 | 308 | - | - | |
| Cone6ag0737 | 313 | MobiDBLite | consensus disorder prediction | 1 | 28 | - | - | |
| Cone6ag0737 | 313 | FunFam | homeobox protein knotted-1-like 3 isoform X1 | 237 | 298 | - | - | |
| Cone6ag0737 | 313 | ProSiteProfiles | 'Homeobox' domain profile. | 236 | 299 | IPR001356 | GO:0003677(InterPro) | |
| Cone6ag0737 | 313 | SMART | KNOX2_2 | 104 | 159 | IPR005541 | GO:0003677(InterPro)|GO:0005634(InterPro) | |
| Cone6ag0737 | 313 | PANTHER | HOMEOBOX PROTEIN TRANSCRIPTION FACTORS | 62 | 299 | IPR050224 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER) | |
| Cone6ag0737 | 313 | ProSiteProfiles | ELK domain profile. | 216 | 236 | IPR005539 | GO:0003677(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cone6ag0737 | Cone-Chr6:3726221 | Cone7ag1682 | Cone-Chr7:11259269 | 3.30E-122 | dispersed | |
| Cone6ag0737 | Cone-Chr6:3726221 | Cone9ag0742 | Cone-Chr9:3527506 | 3.84E-192 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 46322 | PF05757 | PsbQ | 1.30E-35 | No_clan | Cone | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cone6ag0737 | - | - | - | 0.0 |