Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag0740 ATGCAGATGACTATGCCAATGACCGTTTCTGTACCCGCGACCCGTAGATCCACCAAGGACCGCCACACCAAGGTCGAAGGTCGTGGTCGAAGGATCCGAATACCCGCAACGTGCGCCGCCCGGATCTTTCAGCTTACCCGAGAGCTCGGCCACAAATCCGACGGTGAAACAGTCCGGTGGCTGCTCGAACACGCCGAGCAAGCTATCATCGAAGCTACTGGAACCGGAACCGTTCCAGCCAACGCAGTTTCCGTCGGTGGGACCCTCAAAATCCCCACCACCTCAAACACCAACAACGACGCAATTAACAACTCAGAAAACAACGACTCCACGAAGAAACGGAAACGACCATCGAACTCTGAGTTTGTCGACTTAAGTGACGCCGTTACGCAGTCGTCCGGTTTAGCTCCGGTTCGAACCGCTTCTCCAACTTCTAATTCAATCCCGCAAGGTCTCGTTCCCTACTGGGCCGTAAACTACTCCGGCATGATGGTACCTGCCAGCTCCGTCTGGATGATCCCGCAGGCGACAACCCAAGTCGTCGGAATTGGATCAGCAAACCAGCAGCCGAAAATCTGGACGTTGTCGCCGATGGTAACGCCGGTGTTCAAGGTGGCGGCGGCGAGACCTATATCGTCGTACGTCGCAAATCAACCTGTTGGTTTAGAGTTTGGATCTTCTCCGATGACGCTGGTGAGTAACAACAGCTTGTCTAGCTCAGCGGTGAGCTCGAGCACGGTGGGAGTGAAGGTGGCAAAGAAGTCGTCGTCGACGATGGCAGCGCCGACTGGGAGTTCAGGTAGTAGTAGGACTCAAATGCTTAGGGATTTTTCGTTGGAGATTTATGATAAGCGGGAGAATGAGTTCATGGGTAGTAAGATTAATGGCTGTAACCAACAGACACAATCCTCGAAGCCATAA 921 53.53 MQMTMPMTVSVPATRRSTKDRHTKVEGRGRRIRIPATCAARIFQLTRELGHKSDGETVRWLLEHAEQAIIEATGTGTVPANAVSVGGTLKIPTTSNTNNDAINNSENNDSTKKRKRPSNSEFVDLSDAVTQSSGLAPVRTASPTSNSIPQGLVPYWAVNYSGMMVPASSVWMIPQATTQVVGIGSANQQPKIWTLSPMVTPVFKVAAARPISSYVANQPVGLEFGSSPMTLVSNNSLSSSAVSSSTVGVKVAKKSSSTMAAPTGSSGSSRTQMLRDFSLEIYDKRENEFMGSKINGCNQQTQSSKP 306
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3733009 3734677 - Conep06aG0076300.1 Cone6ag0740 439624

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag0740 306 MobiDBLite consensus disorder prediction 91 106 - -
Cone6ag0740 306 MobiDBLite consensus disorder prediction 1 27 - -
Cone6ag0740 306 MobiDBLite consensus disorder prediction 91 126 - -
Cone6ag0740 306 MobiDBLite consensus disorder prediction 107 121 - -
Cone6ag0740 306 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 14 234 IPR005333 GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0043565(PANTHER)
Cone6ag0740 306 Pfam TCP family transcription factor 17 118 IPR017887 -
Cone6ag0740 306 ProSiteProfiles TCP domain profile. 18 72 IPR017887 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag0740 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone5ag0514 Cone-Chr5:2163684 Cone6ag0740 Cone-Chr6:3733009 5.26E-26 dispersed
Cone5ag1248 Cone-Chr5:5840682 Cone6ag0740 Cone-Chr6:3733009 1.11E-15 dispersed
Cone14ag0318 Cone-Chr14:1501325 Cone6ag0740 Cone-Chr6:3733009 3.54E-65 wgd
Cone6ag0740 Cone-Chr6:3733009 Cone9ag0744 Cone-Chr9:3534491 1.26E-164 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g416 . . . . . . Bma07g01629 Bma14g00579 . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0740 Cone9ag0744 . . . . . Blo19g00306 Bda07g00504 Bda09g00062 Bpe08g01471 Bpe11g00690 . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004457 3 1 2 3 3 1 2 1 1 1 1 1 2 1 1 1 1 2 2 1 1 1 1 1 1 1 1 1 1 1 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46323 PF04667 Endosulfine 9.20E-23 No_clan Cone TF