Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone6ag0745 ATGGAGATTTTCAACATATCATCCGACCAGTTCCAAGTCGGGTCCTCATCCGCACCCATTTACGAATCATCCTCAACATCCTACCCTCCTAGAAGCACCGTTGCTGCTGCCACAGCTGACTGGAGATCATCCCATTCCGACGAGGAGGTTATACTAGCCTCTAGCCGGCCGAAAAAGAGAGCAGGGAGGAGAGTATTCAAGGAGACAAGGCACCCAGTTTATAGAGGTGTCAGGAGAAGGAACAACAACAAATGGGTTTGTGAATTACGAGAACCGAACAAGAAGACTCGGATTTGGCTCGGGACTTACCCAACTGCTGAGATGGCGGCTCGGGCACATGACGTGGCGGCGTTGGCTTTTCGAGGGAAGTCTGCTTGTCTGAATTTTGCTGACTCAGCCTGGAGTTTGCCGGTCCCGGTCTCTATGGATGCTAAGGATATCAGGGTGGCGGCTGCTAAGGCGGCACAGGAGTTTCGGGGTGAGGAAGTACGTGGCAATGACATGGCGGAGACAGTTGTGGACGAGCGGGAAAATTCAGGTTCAGGTGATATTGGGTTCAGTGATTTGGATGAAGAGGCTGTGTTTAATATGCCAACGTTGCTTTCCAGCATGGCCGAAGGGCTCCTGCTTTCTCCACCACGTTTTAGTCCAGATGAAAGTTTAAATTTGGATGACGTGGAAAAAGGTGATGACTTGTCGCTTTGGAGCTTCGCTATTTGA 720 50.69 MEIFNISSDQFQVGSSSAPIYESSSTSYPPRSTVAAATADWRSSHSDEEVILASSRPKKRAGRRVFKETRHPVYRGVRRRNNNKWVCELREPNKKTRIWLGTYPTAEMAARAHDVAALAFRGKSACLNFADSAWSLPVPVSMDAKDIRVAAAKAAQEFRGEEVRGNDMAETVVDERENSGSGDIGFSDLDEEAVFNMPTLLSSMAEGLLLSPPRFSPDESLNLDDVEKGDDLSLWSFAI 239
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3780101 3780820 - Conep06aG0076800.1 Cone6ag0745 439629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone6ag0745 239 SUPERFAMILY DNA-binding domain 73 132 IPR016177 GO:0003677(InterPro)
Cone6ag0745 239 ProSiteProfiles AP2/ERF domain profile. 73 130 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone6ag0745 239 SMART rav1_2 73 136 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone6ag0745 239 Gene3D AP2/ERF domain 73 131 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone6ag0745 239 PRINTS Ethylene responsive element binding protein signature 74 85 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone6ag0745 239 PRINTS Ethylene responsive element binding protein signature 96 112 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone6ag0745 239 Pfam AP2 domain 72 122 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone6ag0745 239 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 38 237 IPR045277 GO:0003700(InterPro)
Cone6ag0745 239 CDD AP2 74 132 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone6ag0745 239 FunFam Ethylene-responsive transcription factor 2 72 131 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone6ag0745 Cone-Chr6:3780101 Cone9ag0750 Cone-Chr9:3581215 2.22E-111 dispersed
Cone6ag0745 Cone-Chr6:3780101 Cone6ag0746 Cone-Chr6:3787184 2.91E-122 tandem
Cone14ag0113 Cone-Chr14:525640 Cone6ag0745 Cone-Chr6:3780101 4.45E-80 wgd
Cone15ag0118 Cone-Chr15:569337 Cone6ag0745 Cone-Chr6:3780101 5.88E-76 wgd
Cone6ag0745 Cone-Chr6:3780101 Cone9ag0749 Cone-Chr9:3572793 1.64E-105 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46324 PF08241 Methyltransf_11 1.10E-18 CL0063 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone6ag0745 - - - 0.0